Hg_chrom3_TN10mRNA_5168
Organism: Heterodera glycines Gene Locus: chr3:4836325-4839053 Feature type: polypeptideProtein Sequence
Length: 455
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.278 | 1.039 | 0.834 | 1.062 | 1.071 | 0.654 | 0.769 | 1.416 | 1.426 | 1.099 | 1.681 | 2.015 | 0.634 | 0.942 | 0.911 | 0.54 | 0.833 | 1.014 | 0.711 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4895
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.988
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.616
|
0.172
|
0.022
|
0.611
|
0.127
|
0.307
|
0.105
|
0.020
|
0.129
|
0.116
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003542
|
2.000
|
1.000
|
Hsc_gene_15787.t1
|
Hsc_gene_15787.t1
|
— |
Q5ZI33.1 Kelch-like protein 7 [Gallus gallus]
|
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.787|GO:0110165_0.784|GO:0005622_0.706|GO:0008150_0.676|GO:0005737_0.634|GO:0009987_0.597|GO:0043226_0.572|GO:0043229_0.564|GO:0003674_0.529
|
IPR000210+9-125_17-100_17-131+|IPR002083+306-439_309-437_311-419+|IPR008974+292-446+|IPR011333+2-157_3-125+|IPR011705+134-246_135-242+
|
SM00061+311-419+|SM00225+17-131+|SM00875+134-246+
|
PF00651+9-125+BTB/POZ_domain|PF07707+135-242+BTB_And_C-terminal_Kelch|PF22486+309-437+MATH_domain
|
— |
PTHR45774+5-287+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
449-455
|
1.000
|
1-448
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
51724.730
|
7.035
|
2.500
|
25.495
|
12.527
|
44.835
|
55.165
|
13.407
|
12.088
|
45.275
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
708.768
|
822.050
|
17.450
|
13.726
|
19.546
|
38.111
|
94.805
|
20.898
|
0.691
|
2715.370
|
1551.936
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-5.784
|
-6.041
|
— | — |
0.978
|
1.319
|
— |
2.324
|
-11.701
|
4.152
|
-6.586
|
— | — |
No JSON data available for plots.