Hg_chrom3_TN10mRNA_5174
Organism: Heterodera glycines Gene Locus: chr3:4871491-4879054 Feature type: polypeptideProtein Sequence
Length: 1,776
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.179 | 1.065 | 0.641 | 1.623 | 2.353 | 0.918 | 0.31 | 0.951 | 0.86 | 1.143 | 0.994 | 0.594 | 1.115 | 1.735 | 0.957 | 0.72 | 0.665 | 0.347 | 0.331 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4900
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
28-Not_Clustered
|
0.847
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— |
KRQK,KKKRKR,RERKRGR,KRRNSATSREDRQKKN,RRKNKMRKFGRNGKRGGK,KRVPFTLPSGTENIRAMRR,KKEESDAGEIAYGQRQKKK,RRRRKRSAEKIADQKHGRR,RKMPISNDDIEDEKEKERR,RRKEQSAEEAEDNGGKAKK,RKEQSAEEAEDNGGKAKKK,KKPKPQLSSTRANNRRRRI,GKAKKKPKPQLSSTRANNRRRR
|
— | — |
54-75
|
0.999
|
1-30
|
— |
0.999
|
— |
0.000
|
0.204
|
0.159
|
0.031
|
0.280
|
0.042
|
0.014
|
0.047
|
0.064
|
0.107
|
0.925
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007521
|
1.000
|
1.000
|
Hsc_gene_15782.t1
|
— | — | — |
KHJ82580.1 shTK domain protein [Oesophagostomum dentatum]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+112-165_171-209_171-210_213-249_214-248_296-332_297-331_1738-1776_1739-1776+
|
SM00254+112-165_171-210_213-249_296-332_1738-1776+
|
PF01549+171-209_214-248_297-331_1738-1776+ShK_domain-like
|
— |
PTHR21724+151-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
340-1727
|
2.000
|
1-339;1728-1776
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.809
|
198935.670
|
7.955
|
13.500
|
32.264
|
4.336
|
57.601
|
42.399
|
16.667
|
15.597
|
48.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1026.441
|
390.012
|
139.724
|
24.811
|
92.241
|
142.695
|
80.323
|
139.928
|
691.972
|
3593.052
|
2349.732
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.712
|
-4.110
|
-2.382
|
1.861
|
0.644
|
-0.821
|
— | — | — |
-4.652
|
-5.146
|
— | — |