Hg_chrom3_TN10mRNA_5176
Organism: Heterodera glycines Gene Locus: chr3:4885121-4889971 Feature type: polypeptideProtein Sequence
Length: 482
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.893 | 0.917 | 0.679 | 0.572 | 0.484 | 0.692 | 0.864 | 1.66 | 1.291 | 1.71 | 0.66 | 1.464 | 2.478 | 0.638 | 0.804 | 0.652 | 0.884 | 1.069 | 2.553 | 1.464 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4902
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
32-59
|
0.838
|
— | — | — | — |
0.000
|
— | — |
0.087
|
0.307
|
0.077
|
0.148
|
0.916
|
0.066
|
0.177
|
0.009
|
0.235
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003543
|
1.000
|
2.000
|
Hsc_gene_15779.t1;Hsc_gene_24001.t1
|
Hsc_gene_15779.t1;Hsc_gene_24001.t1
|
— |
O01925.2 Lysophospholipid acyltransferase 5 [Caenorhabditis elegans]
|
KAI1713807.1 MBOAT, membrane-bound o-acyltransferase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.950|GO:0009987_0.882|GO:0008152_0.790|GO:0044238_0.763|GO:0044237_0.752|GO:0006629_0.725|GO:0005575_0.715|GO:0110165_0.715|GO:0044255_0.708|GO:0016020_0.675|GO:0003674_0.641|GO:0003824_0.588|GO:0006793_0.562|GO:0006796_0.560|GO:0019637_0.558|GO:0071944_0.545|GO:0046486_0.541|GO:0006644_0.540|GO:0006650_0.538|GO:0032501_0.532|GO:0005886_0.530
|
IPR004299+104-432+|IPR049941+14-470+
|
— |
PF03062+104-432+MBOAT,_membrane-bound_O-acyltransferase_family
|
— |
PTHR13906+14-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-482
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
55374.770
|
8.859
|
16.000
|
18.257
|
20.539
|
34.855
|
65.145
|
11.618
|
6.639
|
44.606
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1247.856
|
1008.980
|
1474.950
|
1597.938
|
1836.458
|
2024.954
|
1195.217
|
1774.126
|
438.494
|
1038.264
|
781.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.319
|
0.526
|
0.224
|
0.169
|
0.156
|
-0.752
|
-0.295
|
-0.428
|
— |
2.042
|
— | — | — |
No JSON data available for plots.