Hg_chrom3_TN10mRNA_5180
Organism: Heterodera glycines Gene Locus: chr3:4921338-4923640 Feature type: polypeptideProtein Sequence
Length: 397
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.82 | 1.113 | 1.42 | 0.955 | 0.966 | 1.033 | 0.63 | 1.385 | 1.231 | 1.328 | 0.992 | 1.63 | 1.539 | 0.484 | 0.822 | 0.936 | 0.908 | 0.954 | 1.163 | 0.889 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4906
|
— | — |
1.667
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
3.000
|
1.000
|
3.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.577
|
0.215
|
0.025
|
0.641
|
0.187
|
0.152
|
0.094
|
0.010
|
0.192
|
0.119
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001196
|
1.000
|
4.000
|
Hsc_gene_15821.t1;Hsc_gene_15821.t2;Hsc_gene_23641.t1;Hsc_gene_640.t1
|
— | — |
Q9Y2F9.1 BTB/POZ domain-containing protein 3 [Homo sapiens]
|
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.675|GO:0005575_0.635|GO:0110165_0.633|GO:0009987_0.610|GO:0005622_0.578
|
IPR000210+17-125_26-99_26-135+|IPR011333+2-128_11-125+|IPR011705+120-232+
|
SM00225+26-135+|SM00875+120-232+
|
PF00651+17-125+BTB/POZ_domain
|
— |
PTHR45774+3-124+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-3
|
1.000
|
4-397
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
45033.330
|
5.438
|
-6.500
|
26.952
|
12.846
|
47.859
|
52.141
|
13.350
|
13.602
|
48.615
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
red
|
253.726
|
73.520
|
120.351
|
110.163
|
79.230
|
87.491
|
859.703
|
71.739
|
19.971
|
569.250
|
333.845
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.480
|
0.446
|
— |
-0.510
|
— |
3.305
|
-0.394
|
3.724
|
-4.942
|
— | — | — | — |
No JSON data available for plots.