Hg_chrom3_TN10mRNA_5182
Organism: Heterodera glycines Gene Locus: chr3:4941735-4943473 Feature type: polypeptideProtein Sequence
Length: 287
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.053 | 0.729 | 0.38 | 0.721 | 0.523 | 0.893 | 0.705 | 1.22 | 1.084 | 1.507 | 0.581 | 2.255 | 1.936 | 0.402 | 0.64 | 0.946 | 1.428 | 1.003 | 2.948 | 2.05 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4908
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.533
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.049
|
0.223
|
0.021
|
0.051
|
0.946
|
0.258
|
0.452
|
0.003
|
0.248
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007523
|
1.000
|
1.000
|
Hsc_gene_15778.t1
|
Hsc_gene_15778.t1
|
— |
Q20303.1 Long chain fatty acid elongase 6 [Caenorhabditis elegans]
|
KAF7634757.1 Elongation of very long chain fatty acids protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009922|GO:0016020
|
GO:0008150_0.932|GO:0009987_0.880|GO:0008152_0.738|GO:0044238_0.724|GO:0044237_0.717|GO:0009058_0.699|GO:0006629_0.691|GO:0044249_0.673|GO:0044255_0.648|GO:0044281_0.647|GO:0008610_0.641|GO:0005575_0.638|GO:0110165_0.638|GO:0006082_0.615|GO:0019752_0.615|GO:0043436_0.615|GO:0006631_0.614|GO:0032787_0.614|GO:0003674_0.598|GO:0044283_0.598|GO:0006633_0.596|GO:0016053_0.596|GO:0046394_0.596|GO:0072330_0.596|GO:0016020_0.593|GO:0071944_0.555|GO:0005886_0.546|GO:0005622_0.518|GO:0005737_0.518
|
IPR002076+24-268_38-269+|IPR030457+144-152+
|
— |
PF01151+38-269+GNS1/SUR4_family
|
— |
PTHR11157+24-268+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
286-287
|
1.000
|
1-285
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
32943.360
|
8.620
|
8.500
|
14.634
|
20.209
|
36.585
|
63.415
|
9.408
|
5.226
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
6065.044
|
81.571
|
346.727
|
4925.103
|
17099.839
|
15752.202
|
5912.036
|
1781.056
|
61.781
|
9276.283
|
5327.211
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.861
|
5.779
|
3.936
|
1.764
|
— |
-1.402
|
-3.258
|
1.878
|
-7.325
|
6.455
|
1.886
|
— | — |
No JSON data available for plots.