SCN Proteipedia

Hg_chrom3_TN10mRNA_5188

Organism: Heterodera glycines Gene Locus: chr3:4985717-4989052 Feature type: polypeptide

Protein Sequence

Length: 508

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.442	0.87	0.931	0.882	1.115	1.161	0.633	1.476	0.569	1.649	0.597	1.853	1.039	0.681	1.647	0.787	0.774	0.626	0.757	1.216	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4914	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	0.978

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.279	0.135	0.014	0.665	0.054	0.028	0.041	0.025	0.174	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007527	1.000	1.000	Hsc_gene_15772.t1	Hsc_gene_15772.t1	—	Q23049.2 Tetratricopeptide repeat protein 8 [Caenorhabditis elegans]	KAI1712204.1 tetratricopeptide repeat protein 8 [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515\|GO:0034464\|GO:1905515	GO:0008150_0.924\|GO:0009987_0.874\|GO:0005575_0.862\|GO:0110165_0.856\|GO:0005622_0.801\|GO:0016020_0.769\|GO:0032501_0.734\|GO:0043226_0.733\|GO:0043227_0.702\|GO:0016043_0.692\|GO:0071840_0.692\|GO:0051179_0.681\|GO:0071944_0.674\|GO:0005886_0.668\|GO:0051641_0.649\|GO:0006996_0.645\|GO:0033036_0.635\|GO:0070727_0.635\|GO:0003008_0.633\|GO:0008104_0.632\|GO:0065007_0.631\|GO:0051234_0.630\|GO:0006810_0.628\|GO:0007010_0.626\|GO:0050789_0.623\|GO:0007017_0.622\|GO:0050877_0.621\|GO:0033365_0.620\|GO:0000226_0.619\|GO:0061512_0.613\|GO:0050794_0.612\|GO:0030030_0.600\|GO:0120036_0.600\|GO:0032991_0.599\|GO:0044085_0.597\|GO:0051649_0.595\|GO:0022607_0.594\|GO:0016192_0.590\|GO:0046907_0.587\|GO:0030031_0.582\|GO:0007018_0.581\|GO:0051640_0.581\|GO:0051656_0.581\|GO:0070925_0.581\|GO:0120031_0.581\|GO:0048193_0.580\|GO:0001578_0.579\|GO:0010970_0.579\|GO:0030705_0.579\|GO:0031503_0.579\|GO:0051648_0.579\|GO:0051650_0.579\|GO:0099111_0.579\|GO:0005929_0.575\|GO:0006903_0.575\|GO:0030990_0.575\|GO:0035082_0.575\|GO:0035735_0.575\|GO:0042073_0.575\|GO:0042995_0.575\|GO:0044782_0.575\|GO:0048199_0.575\|GO:0060271_0.575\|GO:0097712_0.575\|GO:0098590_0.575\|GO:0120025_0.575\|GO:1905349_0.575\|GO:0043229_0.567	IPR011990+197-391_225-492_392-507+\|IPR019734+253-286_287-320_291-320_321-354_355-388_391-424_425-458_459-492+\|IPR028796+3-506+	SM00028+253-286_287-320_321-354_355-388_391-424_425-458_459-492+	PF13181+291-320+Tetratricopeptide_repeat\|PF13432+401-456+Tetratricopeptide_repeat	—	PTHR44177+3-506+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	67-157	2.000	1-66;158-508	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.561	57333.430	7.605	8.500	26.772	11.811	45.276	54.724	14.961	11.811	47.047

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	56.948	131.892	148.806	66.750	23.678	35.062	39.772	92.001	23.462	29.817	27.093

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.120	-1.050	-1.526	0.581	—	1.294	-1.067	—	—	—	—	—

No JSON data available for plots.

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