Hg_chrom3_TN10mRNA_5190
Organism: Heterodera glycines Gene Locus: chr3:4996427-5000792 Feature type: polypeptideProtein Sequence
Length: 433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.779 | 1.235 | 1.008 | 0.796 | 0.885 | 1.421 | 0.907 | 1.386 | 0.821 | 0.936 | 1.12 | 1.902 | 1.54 | 1.021 | 0.707 | 0.825 | 0.909 | 0.77 | 2.665 | 1.019 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4916
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.859
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.179
|
0.413
|
0.106
|
0.328
|
0.434
|
0.463
|
0.588
|
0.009
|
0.389
|
0.619
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007528
|
1.000
|
1.000
|
Hsc_gene_15771.t1
|
Hsc_gene_15771.t1
|
— |
P09889.4 Tartrate-resistant acid phosphatase type 5 [Sus scrofa]
|
KAH7701310.1 Ser/Thr protein phosphatase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003993|GO:0016787
|
GO:0005575_0.800|GO:0110165_0.798|GO:0003674_0.792|GO:0008150_0.695|GO:0005622_0.594|GO:0016020_0.573|GO:0005737_0.554|GO:0050896_0.542|GO:0003824_0.525|GO:0009987_0.518
|
IPR004843+47-276+|IPR024927+48-369+|IPR029052+43-378_46-371+|IPR051558+35-371+
|
— |
PF00149+47-276+Calcineurin-like_phosphoesterase
|
— |
PTHR10161+35-371+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-433
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.751
|
49347.970
|
7.428
|
6.000
|
24.480
|
15.242
|
46.651
|
53.349
|
13.626
|
10.855
|
49.192
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
brown
|
1513.054
|
164.728
|
4675.263
|
270.581
|
495.482
|
2244.233
|
2152.778
|
7115.696
|
246.391
|
15.281
|
114.328
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.599
|
0.579
|
-4.003
|
0.840
|
2.194
|
— |
1.561
|
-1.583
|
3.765
|
— |
5.064
|
— | — |
No JSON data available for plots.