Hg_chrom3_TN10mRNA_5191
Organism: Heterodera glycines Gene Locus: chr3:5002112-5007402 Feature type: polypeptideProtein Sequence
Length: 458
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.889 | 1.117 | 1.151 | 1.129 | 0.764 | 1.568 | 0.858 | 1.31 | 1.359 | 1.003 | 0.529 | 1.798 | 1.88 | 0.84 | 0.98 | 0.998 | 0.716 | 1.092 | 0.672 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4917
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.638
|
0.373
|
0.027
|
0.669
|
0.117
|
0.229
|
0.095
|
0.048
|
0.082
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003544
|
2.000
|
1.000
|
Hsc_gene_15770.t1
|
Hsc_gene_15770.t1
|
— |
P49725.1 Ornithine decarboxylase [Panagrellus redivivus]
|
KAI1716076.1 pyridoxal-dependent decarboxylase, pyridoxal binding domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0006596
|
GO:0008150_0.862|GO:0008152_0.697|GO:0003674_0.657|GO:0005575_0.648|GO:0110165_0.641|GO:0005622_0.560
|
IPR000183+83-101_103-115_206-219_294-313_421-434+|IPR002433+40-455_55-79_81-108_126-150_156-178_342-355_388-398_408-421+|IPR009006+51-445_269-453+|IPR022643+323-421+|IPR022644+63-302+|IPR022653+83-101+|IPR029066+62-302_65-302+
|
— |
PF00278+323-421+Pyridoxal-dependent_decarboxylase,_C-terminal_sheet_domain|PF02784+63-302+Pyridoxal-dependent_decarboxylase,_pyridoxal_binding_domain
|
G3DSA:3.20.20.10:FF:000005+65-302+Ornithine_decarboxylase
|
PTHR11482+40-455+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-458
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.556
|
50865.910
|
5.573
|
-6.000
|
21.834
|
12.227
|
44.105
|
55.895
|
10.917
|
10.917
|
52.183
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
193.793
|
21.192
|
34.156
|
471.575
|
344.411
|
343.260
|
347.190
|
36.612
|
7.425
|
242.876
|
141.968
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.336
|
3.899
|
-0.487
|
— | — |
-3.352
|
3.393
|
-5.167
|
6.192
|
— | — | — |
No JSON data available for plots.