Hg_chrom3_TN10mRNA_5192
Organism: Heterodera glycines Gene Locus: chr3:5007572-5009780 Feature type: polypeptideProtein Sequence
Length: 301
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.811 | 2.163 | 1.087 | 0.344 | 1.107 | 1.959 | 0.831 | 0.997 | 1.034 | 1.033 | 1.711 | 0.977 | 1.938 | 0.319 | 0.542 | 0.759 | 0.708 | 0.453 | 1.022 | 0.879 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4918
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.488
|
0.081
|
0.007
|
0.644
|
0.312
|
0.149
|
0.075
|
0.020
|
0.201
|
0.475
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000815
|
2.000
|
4.000
|
Hsc_gene_15021.t1;Hsc_gene_15769.t1;Hsc_gene_15769.t2;Hsc_gene_9691.t1
|
Hsc_gene_15768.t2;Hsc_gene_15769.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG0266862
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.940|GO:0003674_0.845|GO:0032502_0.757|GO:0048856_0.757|GO:0003824_0.698|GO:0009653_0.690|GO:0048646_0.680|GO:0051703_0.675|GO:0030435_0.670|GO:0030587_0.670|GO:0043934_0.670|GO:0099120_0.670|GO:0016740_0.669|GO:0140096_0.668|GO:0016772_0.657|GO:0016301_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650|GO:0016773_0.650
|
IPR001870+101-295+|IPR003877+168-294_171-291+|IPR013320+117-295+|IPR043136+115-301+|IPR044736+152-291+|IPR050618+64-291+
|
SM00449+168-294+
|
PF00622+171-291+SPRY_domain
|
— |
PTHR12864+64-291+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-106
|
1.000
|
107-301
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.800
|
34476.660
|
8.889
|
7.000
|
28.571
|
13.289
|
55.150
|
44.850
|
15.947
|
12.625
|
44.518
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
brown
|
1.343
|
0.470
|
2.181
|
1.500
|
2.037
|
1.755
|
5.863
|
0.827
|
0.514
|
0.000
|
0.220
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
1.739
|
— |
2.956
|
— | — | — | — | — |
No JSON data available for plots.