Hg_chrom3_TN10mRNA_5195
Organism: Heterodera glycines Gene Locus: chr3:5022403-5023184 Feature type: polypeptideProtein Sequence
Length: 136
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.368 | 1.71 | 0.936 | 0.0 | 0.613 | 0.566 | 1.576 | 0.735 | 0.654 | 1.292 | 1.003 | 1.298 | 0.408 | 1.414 | 0.75 | 1.261 | 0.603 | 0.668 | 2.828 | 0.216 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4921
|
— | — |
1.889
|
2.000
|
2.000
|
3.000
|
2.000
|
2.000
|
3.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_15762;Hsc_gene_15757;Hsc_gene_15826
|
— | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
APSGESKPNPGQKPSGERRKR
|
— | — | — | — |
1-34
|
— |
0.546
|
— |
0.000
|
0.043
|
0.169
|
0.027
|
0.105
|
0.188
|
0.113
|
0.143
|
0.003
|
0.102
|
0.979
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000298
|
7.000
|
2.000
|
Hsc_gene_15762.t1;Hsc_gene_15765.t1
|
Hsc_gene_15757.t1;Hsc_gene_15758.t1;Hsc_gene_15762.t1;Hsc_gene_15765.t1;Hsc_gene_15766.t1;Hsc_gene_15824.t1;Hsc_gene_15825.t1;Hsc_gene_15825.t3;Hsc_gene_15826.t1
|
— | — |
AAO33475.1 gland-specific protein g5d08 [Heterodera glycines]
|
HEU0202270
|
0.500
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
37-136
|
1.000
|
1-36
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
14189.930
|
9.727
|
3.000
|
20.588
|
7.353
|
42.647
|
57.353
|
11.765
|
8.824
|
61.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
429.412
|
0.911
|
4.243
|
6.683
|
6.032
|
47.273
|
5.785
|
4683.476
|
1.719
|
94.487
|
54.729
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.974
|
2.733
|
— | — |
2.984
|
-3.015
|
6.533
|
-9.519
|
— | — | — | — | — |