Hg_chrom3_TN10mRNA_5201
Organism: Heterodera glycines Gene Locus: chr3:5032866-5037443 Feature type: polypeptideProtein Sequence
Length: 411
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.641 | 0.792 | 0.575 | 0.419 | 1.135 | 0.561 | 0.782 | 1.946 | 1.298 | 1.085 | 0.627 | 1.574 | 1.352 | 0.608 | 1.539 | 1.078 | 0.917 | 0.848 | 1.123 | 0.644 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4927
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.989
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
14-44
|
0.998
|
— | — | — | — |
0.000
|
— | — |
0.372
|
0.383
|
0.258
|
0.411
|
0.043
|
0.114
|
0.102
|
0.285
|
0.266
|
0.637
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_15754.t1;Hsc_gene_15755.t1
|
— |
O50584.1 Low specificity L-threonine aldolase [Pseudomonas sp. NCIMB 10558]
|
KAI1708772.1 beta-eliminating lyase domain-containing protein [Ditylenchus destructor]
|
WP_151160057
|
0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006520|GO:0016829
|
GO:0008150_0.918|GO:0009987_0.847|GO:0008152_0.827|GO:0044237_0.787|GO:0003674_0.726|GO:0003824_0.641|GO:0044281_0.593
|
IPR001597+41-336+|IPR015421+50-294+|IPR015422+43-392+|IPR015424+38-398+
|
— |
PF01212+41-336+Beta-eliminating_lyase
|
— |
PTHR48097+35-397+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-411
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
45263.730
|
9.291
|
15.000
|
25.547
|
12.409
|
44.282
|
55.718
|
15.572
|
9.976
|
50.365
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
1186.260
|
49.618
|
217.999
|
1173.880
|
2530.551
|
3228.269
|
1806.817
|
2663.445
|
54.827
|
772.299
|
464.811
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.905
|
4.425
|
2.538
|
1.076
|
0.367
|
-0.828
|
— | — |
-3.970
|
— | — | — | — |
No JSON data available for plots.