Hg_chrom3_TN10mRNA_5204
Organism: Heterodera glycines Gene Locus: chr3:5053395-5055092 Feature type: polypeptideProtein Sequence
Length: 196
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.602 | 1.305 | 0.649 | 0.704 | 1.19 | 0.392 | 1.033 | 2.296 | 1.587 | 1.034 | 0.155 | 1.501 | 0.85 | 0.785 | 1.249 | 1.093 | 0.836 | 0.696 | 0.785 | 0.9 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4930
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.977
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.461
|
0.419
|
0.057
|
0.713
|
0.156
|
0.073
|
0.255
|
0.189
|
0.157
|
0.263
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007532
|
1.000
|
1.000
|
Hsc_gene_15751.t1
|
Hsc_gene_15751.t1
|
— |
O50584.1 Low specificity L-threonine aldolase [Pseudomonas sp. NCIMB 10558]
|
KAI1708772.1 beta-eliminating lyase domain-containing protein [Ditylenchus destructor]
|
MEO1530473
|
0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006520|GO:0016829
|
GO:0008150_0.756|GO:0003674_0.700|GO:0005575_0.678|GO:0110165_0.671|GO:0009987_0.663|GO:0008152_0.635|GO:0003824_0.612|GO:0044237_0.597|GO:0044238_0.593|GO:0044281_0.572|GO:0005622_0.570|GO:0005737_0.570|GO:0009056_0.548|GO:0006082_0.534|GO:0019752_0.534|GO:0043436_0.534|GO:0044282_0.526|GO:0044248_0.523|GO:0006520_0.521|GO:0016054_0.521|GO:0046395_0.521|GO:1901605_0.521|GO:0009063_0.514|GO:1901606_0.513|GO:0016829_0.505
|
IPR001597+4-181+|IPR015421+13-183+|IPR015424+1-182+
|
— |
PF01212+4-181+Beta-eliminating_lyase
|
— |
PTHR48097+2-181+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-196
|
1v72_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.588
|
21095.700
|
6.006
|
-2.500
|
22.449
|
11.735
|
42.347
|
57.653
|
11.735
|
10.714
|
55.102
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
30.569
|
10.487
|
14.080
|
13.850
|
35.402
|
33.359
|
70.151
|
89.919
|
22.538
|
16.619
|
19.156
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.323
|
— |
1.083
|
1.317
|
— | — | — | — | — | — |
No JSON data available for plots.