Hg_chrom3_TN10mRNA_5205
Organism: Heterodera glycines Gene Locus: chr3:5057201-5058164 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.319 | 0.599 | 0.656 | 0.533 | 1.46 | 0.661 | 0.675 | 1.031 | 1.145 | 1.045 | 0.703 | 1.819 | 2.148 | 0.793 | 1.473 | 1.325 | 0.845 | 0.625 | 1.983 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4931
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|nucleus
|
— | — |
50-70
|
0.999
|
62-104
|
0.987
|
— | — |
0.000
|
— | — |
0.617
|
0.365
|
0.104
|
0.499
|
0.181
|
0.264
|
0.203
|
0.195
|
0.131
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007533
|
1.000
|
1.000
|
Hsc_gene_15750.t1
|
Hsc_gene_15750.t1
|
— | — |
KAI1708772.1 beta-eliminating lyase domain-containing protein [Ditylenchus destructor]
|
MBE0693188
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR015421+1-76+|IPR015422+77-173+|IPR015424+2-182+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
175-194
|
1.000
|
1-174
|
5vye_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.643
|
21848.910
|
6.859
|
1.000
|
26.289
|
13.402
|
45.876
|
54.124
|
13.918
|
12.371
|
47.423
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
21.498
|
17.852
|
12.205
|
11.181
|
19.178
|
13.404
|
47.495
|
57.858
|
0.000
|
26.864
|
15.351
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.774
|
-0.811
|
— |
0.742
|
— |
1.837
|
2.001
|
— | — |
4.340
|
— | — | — |
No JSON data available for plots.