Hg_chrom3_TN10mRNA_5209
Organism: Heterodera glycines Gene Locus: chr3:5067204-5069822 Feature type: polypeptideProtein Sequence
Length: 486
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.172 | 1.34 | 0.935 | 0.213 | 1.063 | 0.58 | 0.882 | 1.852 | 1.143 | 1.418 | 0.779 | 1.21 | 1.257 | 0.435 | 1.302 | 1.029 | 0.843 | 0.966 | 0.791 | 0.847 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4934
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.867
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.104
|
0.968
|
0.005
|
0.151
|
0.064
|
0.044
|
0.057
|
0.012
|
0.046
|
0.082
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003547
|
1.000
|
2.000
|
Hsc_gene_15746.t1;Hsc_gene_19079.t1
|
Hsc_gene_15746.t1;Hsc_gene_19079.t1
|
— |
P98080.2 Cytochrome b-c1 complex subunit 1, mitochondrial [Caenorhabditis elegans]
|
KHN87756.1 Cytochrome b-c1 complex subunit 1, mitochondrial [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.816|GO:0110165_0.809|GO:0016020_0.726|GO:0005622_0.719|GO:0005737_0.683|GO:0008150_0.669|GO:0043226_0.669|GO:0043229_0.669|GO:0043227_0.638|GO:0043231_0.631
|
IPR007863+200-401+|IPR011249+39-240_275-471+|IPR011765+47-194+|IPR050361+37-466+
|
— |
PF00675+47-194+Insulinase_(Peptidase_family_M16)|PF05193+200-401+Peptidase_M16_inactive_domain
|
— |
PTHR11851+37-466+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-486
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.709
|
53945.220
|
7.695
|
9.000
|
26.749
|
12.140
|
47.119
|
52.881
|
15.226
|
11.523
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
3905.042
|
791.632
|
2615.927
|
3204.117
|
4788.755
|
4933.709
|
4094.272
|
3162.023
|
4841.663
|
4606.896
|
4707.511
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.496
|
1.880
|
0.401
|
0.548
|
— |
-0.258
|
-0.748
|
0.516
|
— | — | — | — | — |
No JSON data available for plots.