Hg_chrom3_TN10mRNA_5210
Organism: Heterodera glycines Gene Locus: chr3:5070464-5073849 Feature type: polypeptideProtein Sequence
Length: 419
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.443 | 0.5 | 0.738 | 0.988 | 1.233 | 1.591 | 0.824 | 1.432 | 0.424 | 1.548 | 0.796 | 1.544 | 1.525 | 0.826 | 1.51 | 0.921 | 0.391 | 0.904 | 0.734 | 0.281 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4935
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKQLERVQARVRKAMR,RRAFQRAMHFECKEHKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.807
|
0.178
|
0.011
|
0.442
|
0.028
|
0.036
|
0.066
|
0.004
|
0.052
|
0.054
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007535
|
1.000
|
1.000
|
Hsc_gene_15745.t1
|
Hsc_gene_15740.t1;Hsc_gene_15740.t2;Hsc_gene_15745.t1
|
— |
Q25604.1 Nuclear hormone receptor-like 1 [Onchocerca volvulus]
|
KAI1718487.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003677|GO:0003700|GO:0004879|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.894|GO:0005575_0.868|GO:0110165_0.867|GO:0009987_0.864|GO:0003674_0.863|GO:0065007_0.849|GO:0050789_0.841|GO:0005622_0.838|GO:0005488_0.837|GO:0050794_0.820|GO:0008152_0.801|GO:0009058_0.801|GO:0043226_0.797|GO:0097159_0.796|GO:0044237_0.789|GO:0044238_0.788|GO:0043170_0.786|GO:0043229_0.783|GO:0044249_0.779|GO:0009059_0.778|GO:0010467_0.774|GO:0019222_0.766|GO:0031323_0.766|GO:0060255_0.766|GO:0006139_0.758|GO:0080090_0.758|GO:0034654_0.757|GO:0090304_0.752|GO:0141187_0.752|GO:0009889_0.746|GO:0031326_0.746|GO:0016070_0.744|GO:0032774_0.744|GO:0010556_0.741|GO:0003676_0.739|GO:0010468_0.733|GO:0019219_0.726|GO:0051252_0.721|GO:0006351_0.715|GO:0006355_0.708|GO:2001141_0.708|GO:0003677_0.683|GO:0043565_0.681|GO:0003690_0.669|GO:1990837_0.669|GO:0050896_0.638|GO:0006357_0.634|GO:0006366_0.634|GO:0016020_0.595|GO:0043228_0.592|GO:0043232_0.592|GO:0048518_0.588|GO:0048522_0.588|GO:0000976_0.586|GO:0001067_0.586|GO:0140110_0.580|GO:0051716_0.575|GO:0003700_0.569|GO:0000977_0.537|GO:0043227_0.528|GO:0043231_0.522|GO:0009893_0.521|GO:0023052_0.518|GO:0007154_0.515|GO:0010604_0.507|GO:0031325_0.507|GO:0032501_0.505|GO:0009891_0.503|GO:0031328_0.503|GO:0000785_0.501|GO:0000981_0.501|GO:0005694_0.501
|
IPR001628+25-96_25-100_27-94_28-44_28-54_44-59_77-85_85-93+|IPR001728+16-30_91-107_108-126_197-218+|IPR013088+22-129+|IPR050234+24-222+
|
SM00399+25-96+
|
PF00105+27-94+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000030+21-126+Nuclear_Hormone_Receptor_family
|
PTHR24082+24-222+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-6
|
1.000
|
7-419
|
3m9e_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
46382.280
|
8.240
|
11.000
|
26.969
|
10.263
|
44.153
|
55.847
|
15.513
|
11.456
|
47.494
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
183.840
|
745.403
|
338.332
|
241.200
|
73.763
|
22.620
|
222.255
|
137.632
|
1.382
|
135.314
|
77.915
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.368
|
-1.765
|
-0.380
|
-1.737
|
-1.692
|
3.304
|
2.504
|
0.831
|
— |
7.781
|
— | — | — |
No JSON data available for plots.