SCN Proteipedia

Hg_chrom3_TN10mRNA_5212

Organism: Heterodera glycines Gene Locus: chr3:5080929-5088896 Feature type: polypeptide

Protein Sequence

Length: 2,060

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.993	1.095	1.192	0.368	1.327	1.431	0.561	1.359	1.025	1.437	0.713	1.656	1.2	0.803	1.199	0.971	0.979	0.853	0.56	0.557	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4937	—	—	1.778	2.000	2.000	1.000	1.000	2.000	2.000	2.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.922

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	KKVEEQRKKAQLTKKKDD,RRHAMRTKRYQKDVKRVVR	—	—	—	—	—	—	0.000	—	—	0.736	0.154	0.004	0.548	0.106	0.176	0.261	0.014	0.093	0.031

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001200	1.000	4.000	Hsc_gene_18692.t1;Hsc_gene_18692.t2;Hsc_gene_18714.t1;Hsc_gene_18716.t1	Hsc_gene_18716.t1	—	Q7TMY8.5 E3 ubiquitin-protein ligase HUWE1 [Mus musculus]	KAI1724974.1 HECT-domain (ubiquitin-transferase) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004842	GO:0005575_0.854\|GO:0110165_0.849\|GO:0008150_0.806\|GO:0005622_0.773\|GO:0009987_0.738\|GO:0003674_0.725\|GO:0016020_0.667\|GO:0065007_0.643\|GO:0005737_0.627\|GO:0043226_0.623\|GO:0008152_0.597\|GO:0050789_0.590\|GO:0043229_0.587\|GO:0043227_0.572\|GO:0003824_0.562\|GO:0044238_0.562\|GO:0050794_0.542\|GO:0043170_0.539\|GO:0043231_0.527\|GO:0019538_0.505\|GO:0140096_0.504	IPR000569+1705-2057_1722-2060_1724-2060_1754-2059+\|IPR004170+56-138_69-126+\|IPR025527+994-1024_1055-1082+\|IPR035983+1697-2053+\|IPR037197+56-134_62-128+\|IPR050409+306-2060+	SM00119+1722-2060+	PF00632+1754-2059+HECT-domain_(ubiquitin-transferase)\|PF02825+69-126+WWE_domain\|PF14377+994-1024_1055-1082+Ubiquitin_binding_region	G3DSA:3.30.2160.10:FF:000001+1826-1904+E3_ubiquitin-protein_ligase_NEDD4-like\|G3DSA:3.30.2410.10:FF:000004+1941-2060+E3_ubiquitin-protein_ligase_HUWE1,_variant\|G3DSA:3.90.1750.10:FF:000003+1675-1834+E3_ubiquitin-protein_ligase_UPL1\|G3DSA:3.90.1750.10:FF:000026+1905-1939+E3_ubiquitin-protein_ligase_HACE1	PTHR11254+306-2060+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	607-784;913-1057;1500-1549	4.000	1-606;785-912;1058-1499;1550-2060	7mwf_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.648	231732.750	5.026	-53.000	27.816	9.660	50.874	49.126	13.301	14.515	48.155

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	magenta	6578.036	8408.755	5903.930	6507.176	9803.013	8277.874	8870.097	4937.628	4481.130	5652.382	5150.416

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.740	-0.507	0.249	0.560	-0.230	—	-0.851	0.988	—	—	—	—	—

No JSON data available for plots.

Back to Browser