Hg_chrom3_TN10mRNA_5213
Organism: Heterodera glycines Gene Locus: chr3:5091077-5092969 Feature type: polypeptideProtein Sequence
Length: 188
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.866 | 0.495 | 0.774 | 1.467 | 1.064 | 1.637 | 0.507 | 1.862 | 1.537 | 1.581 | 0.887 | 1.877 | 1.182 | 0.716 | 1.086 | 0.912 | 0.61 | 1.289 | 0.0 | 0.469 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4938
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.230
|
0.844
|
0.006
|
0.360
|
0.037
|
0.093
|
0.029
|
0.259
|
0.102
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003548
|
1.000
|
2.000
|
Hsc_gene_13638.t1;Hsc_gene_15742.t1
|
Hsc_gene_13638.t1;Hsc_gene_15742.t1
|
— |
Q5PQ71.1 Isochorismatase domain-containing protein 2 [Xenopus laevis]
|
KAH7726926.1 isochorismatase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.896|GO:0110165_0.892|GO:0005622_0.819|GO:0016020_0.799|GO:0005737_0.789|GO:0043226_0.719|GO:0043229_0.706|GO:0043227_0.688|GO:0043231_0.677
|
IPR000868+14-163+|IPR036380+2-187_7-181+|IPR050993+3-175+
|
— |
PF00857+14-163+Isochorismatase_family
|
— |
PTHR14119+3-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-188
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.522
|
21123.790
|
7.615
|
4.500
|
25.532
|
9.574
|
44.149
|
55.851
|
14.894
|
10.638
|
44.681
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1100.789
|
647.559
|
742.943
|
910.193
|
1236.345
|
1251.066
|
1586.705
|
840.329
|
825.520
|
1491.135
|
1205.872
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.354
|
0.403
|
0.410
|
— |
0.353
|
-0.678
|
1.060
|
— | — | — | — | — |
No JSON data available for plots.