Hg_chrom3_TN10mRNA_5214
Organism: Heterodera glycines Gene Locus: chr3:5094192-5096518 Feature type: polypeptideProtein Sequence
Length: 116
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.702 | 1.002 | 0.47 | 1.486 | 1.149 | 1.989 | 1.026 | 3.017 | 1.533 | 0.349 | 0.522 | 3.043 | 0.479 | 0.497 | 2.815 | 0.246 | 0.565 | 1.437 | 0.0 | 0.761 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4939
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.579
|
0.394
|
0.116
|
0.648
|
0.033
|
0.061
|
0.034
|
0.048
|
0.054
|
0.443
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001201
|
4.000
|
1.000
|
Hsc_gene_13637.t1
|
— | — |
P52480.4 Pyruvate kinase PKM [Mus musculus]
|
OON17577.1 Pyruvate kinase, barrel domain protein, partial [Opisthorchis viverrini]
|
No
|
-0.160
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0003824|GO:0004743|GO:0006096|GO:0030955
|
GO:0005575_0.837|GO:0110165_0.783|GO:0008150_0.722|GO:0005622_0.695|GO:0003674_0.673|GO:0009987_0.657|GO:0005737_0.616|GO:0008152_0.579|GO:0044237_0.572|GO:0044238_0.570|GO:0006139_0.550|GO:0005488_0.523|GO:0003824_0.502
|
IPR001697+4-57+|IPR015793+5-60+|IPR015813+4-61+|IPR040442+5-59+
|
— |
PF00224+5-60+Pyruvate_kinase,_barrel_domain
|
— |
PTHR11817+4-57+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
115-116
|
1.000
|
1-114
|
7l21_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
13451.520
|
10.348
|
12.500
|
32.759
|
10.345
|
50.000
|
50.000
|
23.276
|
9.483
|
43.103
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
purple
|
46.185
|
14.539
|
31.230
|
46.904
|
82.977
|
44.650
|
46.813
|
33.175
|
22.684
|
72.437
|
51.114
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.871
|
1.553
|
0.697
|
0.792
|
-0.880
|
— | — |
0.640
|
— | — | — | — | — |
No JSON data available for plots.