Hg_chrom3_TN10mRNA_5222
Organism: Heterodera glycines Gene Locus: chr3:5136610-5140468 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.786 | 1.834 | 1.076 | 0.583 | 1.362 | 2.167 | 0.738 | 0.845 | 1.064 | 1.066 | 1.75 | 1.491 | 1.643 | 0.271 | 0.632 | 0.765 | 0.693 | 0.427 | 0.867 | 0.746 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4947
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.620
|
0.073
|
0.006
|
0.565
|
0.250
|
0.135
|
0.063
|
0.009
|
0.149
|
0.349
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000815
|
2.000
|
4.000
|
Hsc_gene_15021.t1;Hsc_gene_15769.t1;Hsc_gene_15769.t2;Hsc_gene_9691.t1
|
Hsc_gene_15769.t1
|
— | — |
AFD54151.1 ran-binding protein 4 [Heterodera glycines]
|
KAG0266862
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.948|GO:0003674_0.842|GO:0032502_0.779|GO:0048856_0.779|GO:0009653_0.696|GO:0003824_0.687|GO:0048646_0.681|GO:0051703_0.675|GO:0030435_0.674|GO:0043934_0.674|GO:0099120_0.674|GO:0030587_0.673|GO:0140096_0.672|GO:0016740_0.669|GO:0016772_0.658|GO:0016301_0.655|GO:0016773_0.654|GO:0004672_0.650|GO:0004712_0.650|GO:0004713_0.650
|
IPR001870+154-349+|IPR003877+222-348_225-345+|IPR013320+167-349+|IPR043136+158-355+|IPR044736+206-345+
|
SM00449+222-348+
|
PF00622+225-345+SPRY_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-154
|
1.000
|
155-355
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.686
|
40818.990
|
7.959
|
5.000
|
30.423
|
11.268
|
56.338
|
43.662
|
16.338
|
14.085
|
42.254
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
6.366
|
0.000
|
3.321
|
3.011
|
4.068
|
1.785
|
7.011
|
1.235
|
1.043
|
19.408
|
11.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6.063
|
6.019
|
— | — | — | — | — |
2.642
|
— | — | — | — | — |
No JSON data available for plots.