Hg_chrom3_TN10mRNA_5224
Organism: Heterodera glycines Gene Locus: chr3:5152188-5152704 Feature type: polypeptideProtein Sequence
Length: 92
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.506 | 2.022 | 0.395 | 1.124 | 0.906 | 0.557 | 1.165 | 0.543 | 2.174 | 0.734 | 1.153 | 1.918 | 0.604 | 0.418 | 1.331 | 0.776 | 1.426 | 1.482 | 0.836 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4949
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-Not_Clustered
|
0.838
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — |
2-34
|
0.982
|
— | — |
0.000
|
— | — |
0.605
|
0.530
|
0.116
|
0.694
|
0.032
|
0.088
|
0.064
|
0.036
|
0.111
|
0.194
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001201
|
4.000
|
1.000
|
Hsc_gene_13637.t1
|
— | — | — |
KAH7723429.1 pyruvate kinase isozymes M1/M2 isoform 2 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.878|GO:0110165_0.821|GO:0008150_0.691|GO:0005622_0.667|GO:0005737_0.641|GO:0009987_0.620|GO:0003674_0.576|GO:0016020_0.518|GO:0008152_0.504|GO:0044237_0.504
|
IPR015795+39-87+|IPR036918+10-92_30-91+
|
— |
PF02887+39-87+Pyruvate_kinase,_alpha/beta_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
92-92
|
1.000
|
1-91
|
6du6_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
10093.760
|
10.220
|
6.500
|
22.826
|
5.435
|
47.826
|
52.174
|
15.217
|
7.609
|
54.348
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
165.506
|
33.574
|
30.504
|
31.890
|
68.789
|
56.806
|
52.165
|
76.451
|
0.000
|
592.769
|
338.725
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.077
|
— | — | — | — |
-23.564
|
5.852
|
— | — | — |
No JSON data available for plots.