Hg_chrom3_TN10mRNA_5227
Organism: Heterodera glycines Gene Locus: chr3:5184055-5185684 Feature type: polypeptideProtein Sequence
Length: 244
(Signal peptide: 1-30)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.096 | 0.953 | 0.522 | 0.848 | 0.82 | 0.631 | 0.829 | 1.844 | 1.457 | 1.938 | 0.745 | 1.446 | 0.911 | 1.103 | 0.669 | 0.703 | 1.075 | 1.056 | 0.946 | 0.844 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4952
|
— | — |
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
3.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — |
1-30
|
0.692
|
0.666
|
0.000
|
0.000
|
0.512
|
0.530
|
0.007
|
0.562
|
0.043
|
0.076
|
0.207
|
0.073
|
0.171
|
0.354
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003549
|
2.000
|
1.000
|
Hsc_gene_19089.t1
|
Hsc_gene_19089.t1
|
— | — | — |
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.800|GO:0005575_0.763|GO:0110165_0.756|GO:0003674_0.735|GO:0009987_0.718|GO:0016020_0.682|GO:0005622_0.650|GO:0005488_0.615|GO:0043226_0.599|GO:0043227_0.585|GO:0043229_0.585|GO:0043231_0.576|GO:0005737_0.562|GO:0008152_0.531
|
IPR002110+84-113_84-116_86-113_125-154_127-188_158-187_158-190+|IPR036770+35-236_83-198+
|
SM00248+84-113_125-154_158-187+
|
PF00023+86-113+Ankyrin_repeat|PF12796+127-188+Ankyrin_repeats_(3_copies)
|
— |
PTHR24134+49-197+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-244
|
5oyj_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
26672.310
|
7.720
|
5.500
|
19.672
|
11.066
|
37.705
|
62.295
|
11.885
|
7.787
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
23.561
|
1.057
|
3.007
|
5.883
|
4.939
|
14.599
|
4.356
|
15.574
|
0.000
|
84.550
|
48.314
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.332
|
1.081
|
— |
1.569
|
-1.736
|
— |
-1.696
|
— | — | — | — | — |