Hg_chrom3_TN10mRNA_5228
Organism: Heterodera glycines Gene Locus: chr3:5187469-5190255 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.884 | 0.952 | 1.311 | 0.739 | 1.592 | 0.8 | 0.627 | 1.17 | 1.083 | 1.185 | 1.152 | 1.376 | 1.354 | 0.6 | 1.034 | 1.225 | 0.607 | 0.886 | 1.2 | 0.688 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4953
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRWSDAF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.666
|
0.167
|
0.013
|
0.487
|
0.062
|
0.177
|
0.123
|
0.013
|
0.247
|
0.220
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001202
|
4.000
|
1.000
|
Hsc_gene_15345.t1
|
— | — | — |
KAI3411182.1 BTB/POZ domain-containing protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.724|GO:0110165_0.724|GO:0008150_0.693|GO:0005622_0.663|GO:0009987_0.639|GO:0043226_0.602|GO:0016020_0.576|GO:0005737_0.574|GO:0043229_0.573|GO:0003674_0.562
|
IPR000210+86-196_92-165_92-199+|IPR002083+361-493_365-493+|IPR008974+361-500+|IPR011333+60-224_76-194+|IPR011705+203-313_206-280+
|
SM00225+92-199+|SM00875+203-313+
|
PF00651+86-196+BTB/POZ_domain|PF07707+206-280+BTB_And_C-terminal_Kelch|PF22486+365-493+MATH_domain
|
— |
PTHR45774+52-492+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-99
|
1.000
|
100-513
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.635
|
58104.570
|
4.940
|
-15.000
|
31.774
|
11.111
|
51.267
|
48.733
|
15.010
|
16.764
|
47.563
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
71.472
|
18.055
|
84.837
|
50.387
|
55.458
|
227.515
|
257.803
|
54.950
|
4.483
|
28.451
|
18.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.005
|
1.345
|
-0.642
|
— |
2.051
|
— |
-2.155
|
2.370
|
— | — | — | — | — |
No JSON data available for plots.