Hg_chrom3_TN10mRNA_5230
Organism: Heterodera glycines Gene Locus: chr3:5203157-5205570 Feature type: polypeptideProtein Sequence
Length: 431
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.486 | 0.809 | 0.548 | 0.48 | 3.906 | 0.654 | 0.442 | 0.58 | 1.134 | 0.972 | 1.582 | 1.911 | 1.353 | 0.357 | 1.326 | 0.928 | 0.685 | 0.633 | 1.249 | 0.409 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4955
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.973
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.854
|
0.082
|
0.008
|
0.473
|
0.052
|
0.012
|
0.039
|
0.004
|
0.038
|
0.110
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007537
|
1.000
|
1.000
|
Hsc_gene_19088.t1
|
Hsc_gene_19088.t1
|
— | — |
KAJ1507302.1 Nucleolar protein 12 [Coelomomyces lativittatus];KAJ1511062.1 Nucleolar protein 12 [Coelomomyces lativittatus];KAJ1511499.1 Nucleolar protein 12 [Coelomomyces lativittatus]
|
No
|
0.320
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723
|
GO:0005575_0.894|GO:0110165_0.889|GO:0005622_0.877|GO:0008150_0.867|GO:0043226_0.769|GO:0016020_0.765|GO:0043229_0.746|GO:0043227_0.693|GO:0043231_0.635|GO:0003674_0.603|GO:0005488_0.603|GO:0005737_0.591|GO:0009987_0.582
|
IPR000504+32-111_33-107_34-91_143-209+|IPR012677+3-122_135-236+|IPR035979+30-204+|IPR050441+22-91+
|
SM00360+33-107_143-209+
|
PF00076+34-91+RNA_recognition_motif
|
— |
PTHR48034+22-91+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
270-431
|
1.000
|
1-269
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.969
|
51340.500
|
4.416
|
-38.500
|
44.548
|
9.049
|
61.253
|
38.747
|
18.097
|
26.450
|
32.483
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
144.204
|
74.683
|
541.587
|
56.035
|
78.299
|
332.537
|
190.073
|
128.682
|
26.056
|
85.640
|
60.104
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.629
|
-0.551
|
-3.163
|
0.452
|
2.099
|
-0.795
|
-1.474
|
0.706
|
— | — | — | — | — |
No JSON data available for plots.