Hg_chrom3_TN10mRNA_5231
Organism: Heterodera glycines Gene Locus: chr3:5211144-5212625 Feature type: polypeptideProtein Sequence
Length: 127
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.099 | 0.916 | 1.145 | 0.0 | 1.181 | 1.009 | 0.656 | 0.0 | 1.225 | 1.383 | 0.954 | 2.316 | 1.75 | 0.606 | 0.964 | 1.125 | 0.904 | 0.835 | 0.0 | 1.39 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4956
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.361
|
0.343
|
0.162
|
0.534
|
0.148
|
0.149
|
0.123
|
0.041
|
0.097
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007538
|
1.000
|
1.000
|
Hsc_gene_19084.t1
|
Hsc_gene_19084.t1
|
— |
P05631.3 ATP synthase subunit gamma, mitochondrial [Bos taurus]
|
KAF7640365.1 ATP synthase subunit gamma [Meloidogyne graminicola]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015986|GO:0045261|GO:0046933
|
GO:0005575_0.919|GO:0110165_0.910|GO:0016020_0.820|GO:0005622_0.730|GO:0005737_0.711|GO:0043226_0.671|GO:0043229_0.660|GO:0043227_0.613|GO:0043231_0.608
|
IPR000131+8-126_9-127_11-28_74-93_105-126+|IPR023632+113-126+|IPR035968+8-127+
|
— |
PF00231+9-127+ATP_synthase
|
G3DSA:1.10.287.80:FF:000013+37-127+ATP_synthase_subunit_gamma,_mitochondrial
|
PTHR11693+8-126+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-127
|
9bpg_G
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.530
|
14263.300
|
4.695
|
-3.000
|
24.409
|
11.024
|
45.669
|
54.331
|
11.024
|
13.386
|
47.244
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
2242.528
|
431.216
|
1009.708
|
1906.952
|
2947.073
|
2527.188
|
1522.211
|
1090.712
|
1722.790
|
4230.820
|
3155.950
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.997
|
2.008
|
1.027
|
0.596
|
-0.207
|
-0.720
|
-1.320
|
0.626
|
— | — | — | — | — |
No JSON data available for plots.