Hg_chrom3_TN10mRNA_5233
Organism: Heterodera glycines Gene Locus: chr3:5221927-5226168 Feature type: polypeptideProtein Sequence
Length: 513
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 1.541 | 1.063 | 0.336 | 1.462 | 2.199 | 0.696 | 1.462 | 0.39 | 0.896 | 1.152 | 1.147 | 1.191 | 1.05 | 0.995 | 1.197 | 0.671 | 0.561 | 1.35 | 0.745 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4958
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.479
|
0.096
|
0.005
|
0.630
|
0.026
|
0.106
|
0.072
|
0.004
|
0.122
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007540
|
1.000
|
1.000
|
Hsc_gene_19082.t1
|
Hsc_gene_19082.t1;Hsc_gene_19083.t1
|
— | — |
KAI3415388.1 hypothetical protein GPALN_004996 [Globodera pallida]
|
No
|
0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.957|GO:0032502_0.821|GO:0005575_0.663|GO:0110165_0.656|GO:0005622_0.618|GO:0043226_0.590|GO:0016020_0.588|GO:0009987_0.583|GO:0065007_0.571|GO:0043229_0.566|GO:0050789_0.562|GO:0050794_0.559|GO:0003674_0.531|GO:0005488_0.531|GO:0043227_0.523
|
IPR001660+442-507_444-499_445-489+|IPR013761+438-508_438-509+
|
SM00454+442-507+
|
PF00536+444-499+SAM_domain_(Sterile_alpha_motif)
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
81-438
|
2.000
|
1-80;439-513
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
58370.220
|
6.135
|
-3.500
|
30.019
|
11.501
|
57.700
|
42.300
|
15.400
|
14.620
|
48.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
orange
|
1200.188
|
813.731
|
840.348
|
930.881
|
1057.667
|
1101.769
|
1183.821
|
1237.649
|
2525.817
|
669.261
|
1464.928
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.183
|
— |
0.256
|
0.152
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.