SCN Proteipedia

Hg_chrom3_TN10mRNA_5234

Organism: Heterodera glycines Gene Locus: chr3:5226844-5229906 Feature type: polypeptide

Protein Sequence

Length: 563

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.516	1.198	0.84	1.347	0.77	1.002	0.698	2.398	1.224	1.8	0.619	1.358	0.987	0.581	1.631	1.573	0.815	0.673	0.683	0.47	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4959	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Not_Clustered	0.763

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KRQK,RRQISPYYLPFRHPRK	—	—	—	—	—	—	0.000	—	—	0.928	0.133	0.043	0.249	0.042	0.028	0.037	0.009	0.067	0.024

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001943	1.000	3.000	Hsc_gene_19016.t1;Hsc_gene_19081.t1;Hsc_gene_19081.t2	Hsc_gene_19081.t1;Hsc_gene_19081.t2	—	—	KHN75506.1 putative F-box/LRR-repeat protein C02F5.7 [Toxocara canis]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.959\|GO:0005575_0.916\|GO:0110165_0.911\|GO:0065007_0.906\|GO:0009987_0.902\|GO:0050789_0.890\|GO:0050794_0.874\|GO:0050896_0.847\|GO:0016020_0.829\|GO:0005622_0.818\|GO:0051716_0.814\|GO:0007154_0.808\|GO:0023052_0.800\|GO:0007165_0.779\|GO:0008152_0.772\|GO:0043170_0.772\|GO:0043226_0.769\|GO:0044238_0.763\|GO:0048519_0.758\|GO:0010646_0.746\|GO:0043229_0.746\|GO:0048523_0.745\|GO:0023051_0.744\|GO:0043227_0.741\|GO:0048583_0.737\|GO:0019538_0.733\|GO:0042221_0.730\|GO:0009966_0.729\|GO:0043231_0.721\|GO:0035556_0.710\|GO:1902531_0.708\|GO:0009719_0.707\|GO:0070887_0.697\|GO:0009056_0.694\|GO:0048585_0.692\|GO:0009968_0.690\|GO:0010648_0.690\|GO:0023057_0.690\|GO:0009725_0.688\|GO:0071495_0.688\|GO:0009057_0.686\|GO:0006508_0.682\|GO:0030163_0.681\|GO:1902532_0.678\|GO:0032870_0.676\|GO:0051603_0.675\|GO:0019941_0.674\|GO:0043632_0.674\|GO:0006511_0.673\|GO:0000160_0.670\|GO:0009723_0.670\|GO:0009755_0.670\|GO:0009873_0.670\|GO:0010104_0.670\|GO:0010105_0.670\|GO:0070297_0.670\|GO:0070298_0.670\|GO:0071369_0.670\|GO:0032991_0.624\|GO:0005634_0.603\|GO:1902494_0.559\|GO:1990234_0.549\|GO:0140535_0.548\|GO:0000151_0.545\|GO:0019005_0.540\|GO:0031461_0.540	IPR001810+58-103_61-95+\|IPR006553+171-195_247-272_360-386_387-411_414-436+\|IPR032675+99-323_368-464+\|IPR036047+46-94+\|IPR050648+265-542+	SM00367+171-195_247-272_360-386_387-411_414-436+	PF12937+61-95+F-box-like	—	PTHR13382+265-542+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-53	1.000	54-563	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.901	63505.870	8.790	29.500	26.110	10.835	51.155	48.845	16.874	9.236	47.425

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	darkgrey	1065.403	997.386	1079.590	908.048	1198.923	932.366	1865.275	899.378	933.296	1005.803	974.729

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.116	-0.272	-0.141	0.370	-0.349	1.010	—	1.194	—	—	—	—	—

No JSON data available for plots.

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