Hg_chrom3_TN10mRNA_5235
Organism: Heterodera glycines Gene Locus: chr3:5247087-5249485 Feature type: polypeptideProtein Sequence
Length: 284
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.45 | 1.228 | 0.768 | 0.243 | 1.174 | 1.896 | 0.796 | 1.761 | 0.782 | 1.142 | 0.747 | 1.864 | 1.369 | 1.151 | 0.934 | 1.258 | 1.27 | 0.907 | 0.813 | 0.621 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4960
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.566
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.421
|
0.225
|
0.037
|
0.726
|
0.110
|
0.270
|
0.149
|
0.025
|
0.076
|
0.262
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000402
|
5.000
|
3.000
|
Hsc_gene_24000.t1;Hsc_gene_24000.t2;Hsc_gene_24000.t3
|
— | — |
Q27504.1 Putative carbonic anhydrase 3 [Caenorhabditis elegans]
|
KAI6192006.1 Alpha carbonic anhydrase domain-containing protein [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.802|GO:0110165_0.796|GO:0003674_0.722|GO:0008150_0.690|GO:0005622_0.659|GO:0005737_0.594|GO:0003824_0.536|GO:0016020_0.528
|
IPR001148+9-282_11-280_37-279+|IPR018338+118-134+|IPR023561+36-277+|IPR036398+12-284_37-281+
|
SM01057+11-280+
|
PF00194+37-279+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+36-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-44
|
1.000
|
45-284
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
32015.930
|
6.500
|
0.000
|
24.296
|
11.620
|
53.521
|
46.479
|
13.028
|
11.268
|
49.296
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
539.761
|
21.989
|
40.949
|
64.600
|
104.621
|
72.680
|
104.574
|
70.150
|
19.578
|
2166.936
|
1246.640
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
1.417
|
0.765
|
0.662
|
-0.510
|
0.536
|
— |
0.719
|
-6.970
|
— |
-4.047
|
— | — |
No JSON data available for plots.