Hg_chrom3_TN10mRNA_5237
Organism: Heterodera glycines Gene Locus: chr3:5256649-5259864 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.875 | 1.934 | 0.648 | 0.615 | 0.726 | 1.828 | 0.566 | 2.772 | 1.188 | 0.937 | 0.33 | 1.048 | 1.1 | 0.838 | 1.212 | 1.839 | 0.714 | 0.81 | 0.762 | 0.874 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4962
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.662
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.378
|
0.232
|
0.008
|
0.689
|
0.154
|
0.223
|
0.174
|
0.054
|
0.372
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007541
|
1.000
|
1.000
|
Hsc_gene_19080.t1
|
Hsc_gene_19080.t1
|
— |
Q9NGC3.2 Centaurin-gamma-1A [Drosophila melanogaster]
|
KAI3415390.1 ArfGAP with GTPase domain, ankyrin repeat and PH domain [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0008150_0.858|GO:0003674_0.718|GO:0009987_0.689|GO:0005488_0.649|GO:0005575_0.624|GO:0110165_0.613|GO:0065007_0.577|GO:0050789_0.569|GO:0050794_0.556|GO:0005622_0.502
|
IPR001806+98-251+|IPR027417+88-260_92-257+|IPR051282+28-405+
|
SM00173+91-255+
|
PF00071+98-251+Ras_family
|
— |
PTHR45819+28-405+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
269-439
|
2.000
|
1-268;440-505
|
3ihw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.904
|
56485.590
|
7.814
|
15.000
|
21.584
|
13.465
|
54.257
|
45.743
|
13.663
|
7.921
|
52.871
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
754.465
|
836.462
|
760.673
|
304.945
|
424.609
|
879.785
|
1176.668
|
766.891
|
516.363
|
982.251
|
782.585
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.367
|
-1.593
|
-1.210
|
0.447
|
1.065
|
0.429
|
— |
0.762
|
— | — | — | — | — |
No JSON data available for plots.