Hg_chrom3_TN10mRNA_5240
Organism: Heterodera glycines Gene Locus: chr3:5266598-5270639 Feature type: polypeptideProtein Sequence
Length: 582
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.079 | 0.959 | 0.812 | 1.303 | 0.515 | 1.234 | 0.982 | 0.773 | 1.222 | 0.743 | 0.547 | 1.718 | 1.05 | 1.586 | 1.157 | 1.031 | 1.408 | 0.703 | 1.454 | 0.91 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4965
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.885
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-20
|
0.745
|
0.998
|
0.000
|
0.000
|
0.222
|
0.144
|
0.048
|
0.224
|
0.070
|
0.080
|
0.092
|
0.046
|
0.214
|
0.878
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007543
|
1.000
|
1.000
|
Hsc_gene_19076.t1
|
Hsc_gene_19076.t1
|
— |
P55115.2 Zinc metalloproteinase nas-15 [Caenorhabditis elegans]
|
KAI3415394.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.764|GO:0005575_0.651|GO:0110165_0.651|GO:0003674_0.633|GO:0032501_0.518
|
IPR001506+126-318_135-318_156-174_209-227_228-245_267-282_303-316+|IPR003582+360-396_361-395_432-468_433-467_546-582_547-582+|IPR006026+131-272+|IPR024079+76-320+|IPR034035+137-315+
|
SM00235+131-272+|SM00254+360-396_432-468_546-582+
|
PF01400+135-318+Astacin_(Peptidase_family_M12A)|PF01549+361-395_433-467_547-582+ShK_domain-like
|
G3DSA:3.40.390.10:FF:000015+72-320+Meprin_A_subunit
|
PTHR10127+85-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-582
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.911
|
63333.060
|
8.331
|
14.500
|
18.385
|
10.309
|
43.127
|
56.873
|
10.825
|
7.560
|
58.591
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
blue
|
71.582
|
53.561
|
23.433
|
24.646
|
96.903
|
142.835
|
103.619
|
35.442
|
2.328
|
131.260
|
76.003
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.422
|
-1.256
|
— |
1.942
|
0.576
|
-0.453
|
-2.123
|
1.693
|
-5.902
|
3.640
|
— | — | — |