Hg_chrom3_TN10mRNA_5241
Organism: Heterodera glycines Gene Locus: chr3:5272549-5275008 Feature type: polypeptideProtein Sequence
Length: 493
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.368 | 0.896 | 1.07 | 0.56 | 1.149 | 1.3 | 0.652 | 1.318 | 0.992 | 1.151 | 0.369 | 1.67 | 1.296 | 0.741 | 1.283 | 1.246 | 1.031 | 0.768 | 1.716 | 0.418 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4966
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.827
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — |
50-99
|
0.961
|
— | — |
0.000
|
— | — |
0.227
|
0.244
|
0.016
|
0.677
|
0.161
|
0.458
|
0.349
|
0.022
|
0.462
|
0.223
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007544
|
1.000
|
1.000
|
Hsc_gene_19075.t1
|
Hsc_gene_19075.t1
|
— | — |
KAI3415394.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0019825|GO:0020037
|
— |
IPR000971+213-312+|IPR009050+188-312+|IPR012292+169-317+|IPR044399+174-316+|IPR050532+161-351+
|
— |
PF00042+213-312+Globin
|
— |
PTHR46458+161-351+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-171
|
1.000
|
172-493
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.601
|
54624.260
|
4.901
|
-13.500
|
24.138
|
10.953
|
48.073
|
51.927
|
11.359
|
12.779
|
52.535
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
370.101
|
65.894
|
91.172
|
29.462
|
57.272
|
78.393
|
44.591
|
66.009
|
0.000
|
1456.897
|
832.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.298
|
-1.519
|
0.926
|
0.469
|
-0.804
|
— | — |
-11.307
|
5.738
|
-4.340
|
— | — |
No JSON data available for plots.