Hg_chrom3_TN10mRNA_5245
Organism: Heterodera glycines Gene Locus: chr3:5293396-5297335 Feature type: polypeptideProtein Sequence
Length: 595
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.723 | 1.485 | 0.794 | 0.985 | 0.924 | 1.12 | 0.68 | 1.681 | 1.083 | 1.181 | 0.56 | 2.076 | 1.074 | 1.293 | 1.269 | 0.984 | 1.075 | 0.942 | 1.034 | 0.741 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4970
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.930
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KKRP,RPKKRKQ,RRPSKKPR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.167
|
0.206
|
0.104
|
0.133
|
0.306
|
0.405
|
0.342
|
0.004
|
0.606
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007547
|
1.000
|
1.000
|
Hsc_gene_19070.t1
|
Hsc_gene_19070.t1
|
— |
Q9UNX9.1 ATP-sensitive inward rectifier potassium channel 14 [Homo sapiens]
|
KAI3415399.1 Inward rectifier potassium channel [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005242|GO:0006813|GO:0016020
|
GO:0005575_0.820|GO:0110165_0.820|GO:0008150_0.783|GO:0016020_0.754|GO:0009987_0.716|GO:0071944_0.707|GO:0003674_0.700|GO:0005886_0.700|GO:0051179_0.590|GO:0006810_0.574|GO:0051234_0.574
|
IPR013518+114-423+|IPR014756+236-433+|IPR016449+65-429_149-175_200-222_333-351_364-384_385-402_411-425+|IPR040445+116-254+|IPR041647+261-423+
|
— |
PF01007+116-254+Inward_rectifier_potassium_channel_transmembrane_domain|PF17655+261-423+Inward_rectifier_potassium_channel_C-terminal_domain
|
— |
PTHR11767+65-429+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-107;429-595
|
1.000
|
108-428
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.798
|
66912.350
|
7.467
|
10.000
|
23.193
|
11.092
|
47.395
|
52.605
|
13.277
|
9.916
|
51.933
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
darkorange
|
549.442
|
106.293
|
624.501
|
370.054
|
436.394
|
1721.918
|
1252.870
|
473.838
|
75.314
|
477.623
|
305.205
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.326
|
1.663
|
-0.646
|
0.205
|
1.996
|
-0.450
|
-1.956
|
1.540
|
— | — | — | — | — |
No JSON data available for plots.