SCN Proteipedia

Hg_chrom3_TN10mRNA_5247

Organism: Heterodera glycines Gene Locus: chr3:5311425-5323682 Feature type: polypeptide

Protein Sequence

Length: 1,951

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.15	0.942	0.848	0.336	2.101	2.431	0.555	0.974	0.775	1.337	1.219	1.508	0.84	0.355	1.559	0.63	0.672	0.652	0.631	0.467	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4972	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	30-Not_Clustered	0.893

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KGEKGGKKKGKG,RRARAEQEKARRKFE,KRLPIYTDSVARFYMGKRK,RRQADASKSLAKAERRARE	—	—	—	—	—	—	0.000	—	—	0.217	0.249	0.018	0.739	0.055	0.105	0.241	0.010	0.285	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007549	1.000	1.000	Hsc_gene_19064.t1	Hsc_gene_1524.t1;Hsc_gene_17291.t1;Hsc_gene_17296.t1;Hsc_gene_19064.t1;Hsc_gene_19067.t1;Hsc_gene_19068.t1;Hsc_gene_19068.t2;Hsc_gene_19068.t3	—	P12845.2 Myosin-2 [Caenorhabditis elegans]	KAI3415402.1 Myosin N-terminal SH3-like domain [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005524\|GO:0016459\|GO:0051015	GO:0005575_0.911\|GO:0110165_0.909\|GO:0005622_0.872\|GO:0043226_0.825\|GO:0008150_0.788\|GO:0043229_0.777\|GO:0005737_0.755\|GO:0043228_0.658\|GO:0043232_0.658\|GO:0099080_0.583\|GO:0099081_0.570\|GO:0099512_0.570\|GO:0009987_0.559\|GO:0003674_0.553\|GO:0032991_0.552\|GO:0032501_0.535\|GO:0005856_0.525	IPR001609+75-787_81-786_83-774_111-130_167-192_220-247_452-480_506-534+\|IPR002928+855-1931+\|IPR004009+28-72_28-77+\|IPR008989+27-76+\|IPR014751+1574-1630+\|IPR027417+52-844+\|IPR036961+79-712+	SM00242+75-787+	PF00063+83-774+Myosin_head_(motor_domain)\|PF01576+855-1931+Myosin_tail\|PF02736+28-72+Myosin_N-terminal_SH3-like_domain	G3DSA:1.10.10.820:FF:000001+276-332+Myosin_heavy_chain\|G3DSA:1.20.120.720:FF:000001+333-441+Myosin_heavy_chain,_muscle\|G3DSA:1.20.5.370:FF:000008+1531-1577+Myosin_heavy_chain\|G3DSA:1.20.5.370:FF:000009+1578-1627+Myosin_heavy_chain,_isoform_G\|G3DSA:1.20.58.530:FF:000001+464-669+Myosin_heavy_chain\|G3DSA:2.30.30.360:FF:000001+27-76+Myosin_heavy_chain\|G3DSA:3.40.850.10:FF:000024+79-290+Myosin_heavy_chain,_isoform_J	PTHR45615+29-1924+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-19;876-1267;1311-1951	2.000	20-875;1268-1310	6qdj_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.680	224664.060	6.063	-12.000	34.905	7.381	56.945	43.055	17.632	17.273	38.903

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	brown	grey	2138.214	533.680	3411.922	4890.175	2282.147	901.237	618.993	1468.777	1614.304	2853.861	2322.622

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.449	3.058	0.627	-1.131	-1.326	-0.531	0.602	-1.105	—	1.756	—	—	—

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