Hg_chrom3_TN10mRNA_5248
Organism: Heterodera glycines Gene Locus: chr3:5329785-5333222 Feature type: polypeptideProtein Sequence
Length: 635
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.08 | 1.392 | 0.63 | 0.597 | 1.496 | 1.05 | 0.956 | 1.339 | 0.63 | 0.894 | 1.145 | 1.297 | 0.744 | 0.666 | 0.803 | 1.867 | 1.317 | 0.62 | 0.606 | 0.139 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4973
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.749
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.925
|
0.083
|
0.014
|
0.301
|
0.037
|
0.009
|
0.028
|
0.024
|
0.070
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007550
|
1.000
|
1.000
|
Hsc_gene_19062.t1
|
— | — |
A8XJ98.1 FLYWCH-type zinc finger-containing protein peb-1 [Caenorhabditis briggsae]
|
KAF7632128.1 FLYWCH-type domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.949|GO:0110165_0.947|GO:0005622_0.904|GO:0016020_0.878|GO:0043226_0.875|GO:0043229_0.849|GO:0043227_0.802|GO:0043231_0.765|GO:0005634_0.712|GO:0008150_0.617|GO:0009987_0.585|GO:0065007_0.571|GO:0050789_0.554|GO:0050794_0.549|GO:0003674_0.534|GO:0005488_0.534
|
IPR007588+15-79+
|
— |
PF04500+15-79+FLYWCH_zinc_finger_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
134-635
|
1.000
|
1-133
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
67849.880
|
6.743
|
2.500
|
26.614
|
6.614
|
57.795
|
42.205
|
14.173
|
12.441
|
57.165
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
1811.441
|
406.844
|
955.377
|
972.546
|
938.061
|
1149.624
|
1106.720
|
873.919
|
567.610
|
5098.189
|
3156.512
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.003
|
1.120
|
0.134
|
— |
0.308
|
— |
-0.498
|
0.482
|
-3.293
|
— |
-2.163
|
— | — |
No JSON data available for plots.