Hg_chrom3_TN10mRNA_5249
Organism: Heterodera glycines Gene Locus: chr3:5333959-5335916 Feature type: polypeptideProtein Sequence
Length: 346
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.84 | 0.807 | 1.471 | 0.199 | 1.301 | 0.519 | 0.963 | 0.578 | 0.835 | 1.015 | 1.182 | 2.38 | 1.445 | 0.889 | 1.946 | 0.454 | 0.758 | 1.051 | 1.556 | 0.68 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4974
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
21-pJ2_J3
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
KVKK,RRDLAAMTSSRKKSA,KKTWVPVECARKARRM
|
— | — | — | — |
1-19
|
0.847
|
1.000
|
0.000
|
0.000
|
0.177
|
0.309
|
0.039
|
0.278
|
0.941
|
0.136
|
0.220
|
0.058
|
0.335
|
0.379
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003552
|
2.000
|
1.000
|
Hsc_gene_19061.t1
|
Hsc_gene_19061.t1
|
— |
Q66H94.1 Peptidyl-prolyl cis-trans isomerase FKBP9 [Rattus norvegicus]
|
KAI1731618.1 FKBP-type peptidyl-prolyl cis-trans isomerase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003755|GO:0005509
|
GO:0005575_0.763|GO:0110165_0.763|GO:0016020_0.679|GO:0005622_0.673|GO:0043226_0.615|GO:0005737_0.612|GO:0043229_0.610|GO:0003674_0.587|GO:0043227_0.575|GO:0043231_0.570|GO:0008150_0.542
|
IPR001179+85-182_92-185+|IPR002048+190-260_193-260_230-265+|IPR011992+190-325+|IPR018247+197-209_243-255_311-323+|IPR046357+66-185+|IPR052273+60-256+
|
— |
PF00254+85-182+FKBP-type_peptidyl-prolyl_cis-trans_isomerase|PF13499+190-260+EF-hand_domain_pair
|
— |
PTHR46222+60-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-346
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.693
|
39753.510
|
9.372
|
7.000
|
34.393
|
10.694
|
47.688
|
52.312
|
18.497
|
15.896
|
46.821
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
277.209
|
114.588
|
147.819
|
511.833
|
366.368
|
186.959
|
314.871
|
173.531
|
62.606
|
484.847
|
303.886
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.022
|
1.900
|
-0.514
|
-0.956
|
0.762
|
— |
1.002
|
— | — | — | — | — |