Hg_chrom3_TN10mRNA_5255
Organism: Heterodera glycines Gene Locus: chr3:5377550-5383690 Feature type: polypeptideProtein Sequence
Length: 1,258
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.832 | 0.925 | 0.439 | 0.835 | 1.141 | 0.804 | 1.59 | 1.184 | 1.3 | 0.518 | 1.73 | 1.259 | 0.994 | 1.492 | 1.454 | 0.756 | 0.939 | 1.406 | 0.538 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4980
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
RRRR,RLLKRRH,RKVSEPNPPVGSRRKNS,RRWTFDGRHDERNKWRFR
|
— | — | — | — | — | — |
0.010
|
— | — |
0.054
|
0.038
|
0.211
|
0.173
|
0.198
|
0.443
|
0.185
|
0.034
|
0.790
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003553
|
2.000
|
1.000
|
Hsc_gene_19056.t1
|
Hsc_gene_19056.t1
|
— |
Q21415.3 Glutamate receptor ionotropic, kainate glr-3 [Caenorhabditis elegans]
|
KAI6218292.1 GLutamate Receptor family [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0015276|GO:0016020
|
GO:0005575_0.914|GO:0110165_0.914|GO:0008150_0.891|GO:0016020_0.876|GO:0071944_0.860|GO:0005886_0.845|GO:0009987_0.831|GO:0003674_0.773|GO:0065007_0.770|GO:0050789_0.752|GO:0050896_0.747|GO:0051179_0.734|GO:0050794_0.729|GO:0006810_0.722|GO:0051234_0.722|GO:0051716_0.687|GO:0023052_0.669|GO:0007154_0.666|GO:0030054_0.654|GO:0055085_0.641|GO:0007165_0.636|GO:0005622_0.634|GO:0005488_0.630|GO:0006811_0.619|GO:0034220_0.611|GO:0007166_0.607|GO:0045202_0.596|GO:0005215_0.591|GO:0022857_0.591|GO:0015267_0.586|GO:0022803_0.586|GO:0005216_0.585|GO:0015075_0.585|GO:0022836_0.570|GO:0060089_0.563|GO:0015276_0.558|GO:0022834_0.558|GO:0038023_0.558|GO:0043226_0.543|GO:0098590_0.542|GO:0004888_0.539|GO:0007215_0.534|GO:0022835_0.525|GO:0030594_0.525|GO:0065008_0.525|GO:0005230_0.524|GO:0022824_0.524|GO:0015711_0.517|GO:0036094_0.517|GO:0043167_0.516|GO:0015849_0.513|GO:0046942_0.513|GO:0006865_0.512|GO:1903825_0.512|GO:1905039_0.512|GO:0003333_0.510|GO:0035235_0.507|GO:1990806_0.507|GO:0043168_0.505
|
IPR001320+496-895_622-942+|IPR001828+53-349+|IPR015683+137-992+|IPR019594+498-561_507-598+|IPR028082+37-398+
|
SM00079+496-895+|SM00918+498-561+
|
PF00060+622-942+Ligand-gated_ion_channel|PF01094+53-349+Receptor_family_ligand_binding_region|PF10613+507-598+Ligated_ion_channel_L-glutamate-_and_glycine-binding_site
|
G3DSA:3.40.190.10:FF:000024+501-605+Glutamate_receptor,_ionotropic,_delta_1|G3DSA:3.40.190.10:FF:000060+751-855+Glutamate_receptor_ionotropic,_kainate_1
|
PTHR18966+137-992+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
447-503;1054-1258
|
2.000
|
1-446;504-1053
|
9nra_C
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
140196.750
|
8.392
|
28.000
|
24.006
|
11.367
|
46.820
|
53.180
|
13.911
|
10.095
|
50.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
violet
|
287.705
|
210.514
|
474.721
|
310.453
|
99.256
|
54.847
|
83.390
|
247.695
|
385.024
|
414.613
|
401.932
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.944
|
0.423
|
-0.504
|
-1.678
|
-0.841
|
0.614
|
2.076
|
-1.430
|
— | — | — | — | — |
No JSON data available for plots.