SCN Proteipedia

Hg_chrom3_TN10mRNA_5258

Organism: Heterodera glycines Gene Locus: chr3:5393217-5414614 Feature type: polypeptide

Protein Sequence

Length: 4,416

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.014	0.911	0.877	0.383	1.547	2.114	0.725	1.313	0.956	1.056	0.707	0.746	1.063	1.624	0.883	0.763	0.813	1.026	0.888	0.679	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4983	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	LGEV,RRRR,RKNVYHAEAGPPPERQKQK	—	—	—	—	—	—	0.000	—	—	0.313	0.180	0.014	0.728	0.063	0.061	0.048	0.010	0.331	0.060

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001946	2.000	2.000	Hsc_gene_19052.t1;Hsc_gene_19052.t2	Hsc_gene_19052.t1;Hsc_gene_19052.t2	—	V6CLP5.1 Kettin homolog [Caenorhabditis elegans]	KAI3415413.1 Repeat of unknown function (DUF1136) [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0005575_0.906\|GO:0110165_0.902\|GO:0005622_0.826\|GO:0043226_0.753\|GO:0005737_0.742\|GO:0043229_0.724\|GO:0008150_0.647\|GO:0043228_0.615\|GO:0043232_0.615\|GO:0009987_0.604\|GO:0099080_0.569\|GO:0003674_0.534\|GO:0099081_0.527\|GO:0099512_0.527\|GO:0065007_0.509	IPR003598+335-407_496-565_616-685_748-816_886-955_1153-1222_1561-1624_1687-1756_1820-1889_2214-2284_2348-2417_2757-2812_3009-3078_3281-3350_3382-3451_3529-3591_3998-4065_4097-4164_4204-4271_4328-4395+\|IPR003599+329-418_490-576_610-696_745-827_880-966_1013-1099_1147-1233_1280-1366_1416-1502_1534-1635_1681-1767_1814-1900_1945-2031_2077-2163_2209-2295_2342-2428_2474-2560_2605-2691_2737-2823_2869-2955_3003-3089_3139-3225_3275-3361_3376-3462_3516-3598_3992-4076_4091-4175_4198-4282_4322-4406+\|IPR007110+323-416_484-574_593-694_734-825_873-964_1007-1097_1139-1231_1272-1364_1405-1500_1541-1633_1673-1765_1806-1900_1936-2029_2070-2161_2202-2293_2335-2426_2599-2689_2730-2821_2862-2953_2996-3089_3132-3223_3268-3359_3369-3460_3510-3600_3642-3679_3986-4074_4085-4173_4192-4282_4316-4404+\|IPR013098+323-415_484-575_604-695_734-825_873-965_1007-1098_1139-1229_1285-1364_1438-1501_1570-1632_1676-1765_1816-1899_1939-2030_2070-2162_2202-2294_2350-2427_2467-2559_2599-2689_2730-2822_2864-2954_2998-3088_3140-3224_3268-3360_3371-3461_3510-3599_3642-3682_3986-4075_4085-4174_4192-4279_4316-4405+\|IPR013783+319-418_479-576_600-696_751-835_876-982_1010-1121_1146-1254_1279-1384_1419-1522_1556-1657_1681-1791_1815-1922_1942-2053_2065-2165_2205-2323_2341-2448_2460-2561_2600-2713_2726-2823_2868-2976_3001-3108_3142-3232_3266-3364_3369-3466_3505-3603_3635-3723_3980-4081_4082-4177_4180-4285_4310-4414+\|IPR036179+322-415_480-576_604-698_732-826_871-967_1007-1104_1137-1231_1270-1366_1423-1502_1537-1636_1672-1767_1804-1899_1937-2031_2070-2169_2200-2295_2335-2428_2462-2559_2597-2691_2727-2824_2858-2957_2994-3090_3130-3225_3267-3361_3367-3469_3508-3601_3640-3685_3986-4079_4083-4174_4189-4280_4316-4410+\|IPR051129+4084-4175+	SM00408+335-407_496-565_616-685_748-816_886-955_1153-1222_1561-1624_1687-1756_1820-1889_2214-2284_2348-2417_2757-2812_3009-3078_3281-3350_3382-3451_3529-3591_3998-4065_4097-4164_4204-4271_4328-4395+\|SM00409+329-418_490-576_610-696_745-827_880-966_1013-1099_1147-1233_1280-1366_1416-1502_1534-1635_1681-1767_1814-1900_1945-2031_2077-2163_2209-2295_2342-2428_2474-2560_2605-2691_2737-2823_2869-2955_3003-3089_3139-3225_3275-3361_3376-3462_3516-3598_3992-4076_4091-4175_4198-4282_4322-4406+	PF07679+323-415_484-575_604-695_734-825_873-965_1007-1098_1139-1229_1285-1364_1438-1501_1570-1632_1676-1765_1816-1899_1939-2030_2070-2162_2202-2294_2350-2427_2467-2559_2599-2689_2730-2822_2864-2954_2998-3088_3140-3224_3268-3360_3371-3461_3510-3599_3642-3682_3986-4075_4085-4174_4192-4279_4316-4405+Immunoglobulin_I-set_domain	G3DSA:2.60.40.10:FF:000032+319-417+palladin_isoform_X1\|G3DSA:2.60.40.10:FF:000107+3985-4077_4191-4283+Myosin,_light_chain_kinase_a\|G3DSA:2.60.40.10:FF:000119+877-985_1146-1252_1546-1654_1678-1786_1812-1919_1944-2050+Sallimus,_isoform_P\|G3DSA:2.60.40.10:FF:000425+4080-4177_4312-4409+Myosin_light_chain_kinase\|G3DSA:2.60.40.10:FF:000962+479-578_599-699_730-829_1002-1102_1267-1369_1400-1505_2065-2166_2197-2298_2330-2431_2594-2694_2725-2826_2857-2958_2991-3092_3127-3228_3264-3363_3364-3464_3505-3605+titin_isoform_X1	PTHR47633+4084-4175+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-511;963-1009;1380-1436;1896-1982;2038-2111;2702-2770;2838-2903;3074-3138;3789-4010;4074-4236	10.000	512-962;1010-1379;1437-1895;1983-2037;2112-2701;2771-2837;2904-3073;3139-3788;4011-4073;4237-4416	2wwk_O	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.607	491217.300	4.699	-168.000	25.725	9.918	48.188	51.812	11.617	14.108	50.181

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	8864.226	11944.954	29146.730	4197.833	1468.176	8142.341	1103.430	28881.671	2457.472	5105.958	3970.892

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.058	-1.646	-2.688	-1.547	2.485	-2.873	1.723	-4.567	—	—	—	—	—

No JSON data available for plots.

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