SCN Proteipedia

Hg_chrom3_TN10mRNA_5263

Organism: Heterodera glycines Gene Locus: chr3:5427250-5430853 Feature type: polypeptide

Protein Sequence

Length: 582

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.779	0.959	0.625	0.592	0.859	1.366	0.389	1.546	1.184	1.3	0.703	1.516	1.718	1.19	1.438	1.227	1.014	0.963	1.19	0.859	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom3_TN10gene_4988	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-ppJ2	0.992

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	KLPRKRRR,KRLSSTRPTPAASPTRKKS	—	—	—	—	—	—	0.000	—	—	0.047	0.077	0.030	0.133	0.269	0.348	0.258	0.003	0.711	0.041

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0007558	1.000	1.000	Hsc_gene_19046.t1	Hsc_gene_19046.t1	—	G5EFC3.1 Potassium voltage-gated channel protein egl-36 [Caenorhabditis elegans]	KAI3415415.1 Potassium voltage-gated channel protein egl-36 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005216\|GO:0005249\|GO:0005515\|GO:0006811\|GO:0006813\|GO:0008076\|GO:0016020\|GO:0051260\|GO:0055085	GO:0008150_0.941\|GO:0009987_0.899\|GO:0051179_0.869\|GO:0006810_0.860\|GO:0051234_0.860\|GO:0005575_0.815\|GO:0003674_0.814\|GO:0110165_0.813\|GO:0016020_0.778\|GO:0071944_0.772\|GO:0005886_0.769\|GO:0055085_0.756\|GO:0006811_0.747\|GO:0034220_0.738\|GO:0005215_0.727\|GO:0005216_0.727\|GO:0015075_0.727\|GO:0015267_0.727\|GO:0022803_0.727\|GO:0022857_0.727\|GO:0022836_0.685\|GO:0098660_0.649\|GO:0006812_0.641\|GO:0030001_0.641\|GO:0005261_0.629\|GO:0008324_0.629\|GO:0098655_0.629\|GO:0005244_0.618\|GO:0022832_0.618\|GO:0098662_0.612\|GO:0015318_0.598\|GO:0022890_0.588\|GO:0046873_0.588\|GO:0006813_0.577\|GO:0071805_0.575\|GO:0022843_0.562\|GO:0005267_0.555\|GO:0015079_0.555\|GO:0065007_0.547\|GO:0005249_0.546\|GO:0050789_0.502	IPR000210+3-103+\|IPR003131+5-95+\|IPR003968+45-55_322-330_346-360_419-430+\|IPR003974+46-59_61-76_79-100_162-174_444-458+\|IPR005821+173-441+\|IPR011333+1-113_2-103+\|IPR027359+147-329+	SM00225+3-103+	PF00520+173-441+Ion_transport_protein\|PF02214+5-95+BTB/POZ_domain	G3DSA:1.10.287.70:FF:000002+330-442+Potassium_voltage-gated_channel_subfamily_a_member\|G3DSA:1.20.120.350:FF:000074+145-329+SHaW_family_of_potassium_channels\|G3DSA:3.30.710.10:FF:000020+1-113+Potassium_voltage-gated_channel_protein_Shaw	PTHR11537+2-477+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	471-582	1.000	1-470	7wf3_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.847	66843.000	9.751	27.000	23.368	13.746	47.595	52.405	14.777	8.591	46.564

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	1320.911	265.453	369.702	225.471	124.885	72.237	109.379	136.991	210.465	5132.095	3022.825

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.247	-0.373	-0.603	-0.884	-0.775	0.607	0.821	—	—	—	-4.756	—	—

No JSON data available for plots.

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