Hg_chrom3_TN10mRNA_5264
Organism: Heterodera glycines Gene Locus: chr3:5436007-5439688 Feature type: polypeptideProtein Sequence
Length: 815
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.942 | 1.341 | 0.669 | 0.635 | 1.104 | 2.108 | 0.438 | 1.534 | 0.573 | 1.177 | 0.613 | 1.732 | 0.886 | 1.133 | 1.002 | 1.402 | 1.448 | 0.818 | 0.566 | 0.577 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4989
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-Not_Clustered
|
0.565
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
endoplasmic_reticulum
|
nucleus
|
QPKRP
|
— | — | — | — |
1-24
|
0.565
|
0.927
|
0.000
|
0.000
|
0.207
|
0.208
|
0.030
|
0.227
|
0.697
|
0.141
|
0.485
|
0.507
|
0.267
|
0.237
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007559
|
1.000
|
1.000
|
Hsc_gene_19045.t1
|
Hsc_gene_19045.t1
|
— |
Q9UBS9.1 SUN domain-containing ossification factor [Homo sapiens]
|
KAF7634123.1 SUN domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.972|GO:0005575_0.863|GO:0110165_0.861|GO:0009987_0.839|GO:0016020_0.802|GO:0005622_0.773|GO:0043226_0.732|GO:0043229_0.702|GO:0043227_0.681|GO:0043231_0.657|GO:0071944_0.657|GO:0005886_0.639|GO:0005737_0.634|GO:0005773_0.565
|
IPR012919+87-252_140-251+|IPR045120+67-666+
|
— |
PF07738+140-251+Sad1_/_UNC-like_C-terminal
|
— |
PTHR12953+67-666+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-119;411-642
|
2.000
|
120-410;643-815
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
90629.390
|
6.599
|
1.500
|
22.331
|
8.957
|
54.969
|
45.031
|
12.025
|
10.307
|
53.006
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
tan
|
2272.420
|
712.674
|
1063.249
|
1373.775
|
1320.812
|
2676.246
|
2796.912
|
2749.710
|
6675.959
|
174.852
|
2961.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.350
|
0.809
|
0.477
|
— |
1.034
|
— | — | — |
5.158
|
-2.114
|
3.798
|
— | — |