Hg_chrom3_TN10mRNA_5265
Organism: Heterodera glycines Gene Locus: chr3:5439806-5441416 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.492 | 0.984 | 1.119 | 0.796 | 1.346 | 0.888 | 0.87 | 0.962 | 1.197 | 1.091 | 0.524 | 2.262 | 1.603 | 0.592 | 1.491 | 1.099 | 1.198 | 0.758 | 0.888 | 1.244 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4990
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.617
|
0.228
|
0.013
|
0.637
|
0.161
|
0.164
|
0.091
|
0.004
|
0.050
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007560
|
1.000
|
1.000
|
Hsc_gene_19044.t1
|
Hsc_gene_19044.t1
|
— |
P34286.2 Proteasome subunit beta type-1 [Caenorhabditis elegans]
|
XP_024508491.1 Proteasome subunit beta type-1 [Strongyloides ratti];CEF69291.1 Proteasome subunit beta type-1 [Strongyloides ratti]
|
No
|
-0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005839|GO:0051603
|
GO:0005575_0.787|GO:0110165_0.787|GO:0008150_0.764|GO:0005622_0.714|GO:0016020_0.696|GO:0043226_0.598|GO:0043229_0.594|GO:0043227_0.572|GO:0005737_0.570|GO:0043231_0.561|GO:0032991_0.523
|
IPR001353+47-242+|IPR023333+39-255_49-243+|IPR029055+42-260_43-247+
|
— |
PF00227+47-242+Proteasome_subunit
|
— |
PTHR32194+39-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
258-260
|
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.541
|
29832.640
|
4.928
|
-6.500
|
26.923
|
13.077
|
49.615
|
50.385
|
12.692
|
14.231
|
47.308
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
3298.735
|
1509.963
|
2306.406
|
4149.541
|
4432.724
|
4171.153
|
3340.794
|
4960.809
|
3000.532
|
2854.795
|
2917.253
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.382
|
1.321
|
0.956
|
— | — |
-0.310
|
— |
-0.427
|
— | — | — | — | — |
No JSON data available for plots.