Hg_chrom3_TN10mRNA_5266
Organism: Heterodera glycines Gene Locus: chr3:5442322-5444377 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.521 | 1.458 | 0.868 | 0.412 | 1.294 | 0.765 | 0.888 | 1.493 | 1.857 | 1.533 | 0.859 | 0.702 | 1.41 | 0.746 | 1.34 | 0.853 | 0.93 | 0.769 | 0.459 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4991
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
0.985
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|mitochondrion
|
— | — |
19-43
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.266
|
0.660
|
0.062
|
0.538
|
0.255
|
0.293
|
0.300
|
0.363
|
0.210
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007561
|
1.000
|
1.000
|
Hsc_gene_19043.t1
|
Hsc_gene_19043.t1
|
— |
Q95Q18.1 Beta-lactamase-like protein 2 homolog [Caenorhabditis elegans]
|
KAF7635256.1 Metallo-beta-lactamase domain protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.694|GO:0008152_0.531|GO:0005575_0.509|GO:0110165_0.507
|
IPR001279+66-234_67-234+|IPR036388+240-313+|IPR036866+38-239_45-304+|IPR047921+51-238+|IPR050662+39-309+
|
SM00849+67-234+
|
PF00753+66-234+Metallo-beta-lactamase_superfamily
|
G3DSA:3.60.15.10:FF:000017+38-239+Lactamase_beta_2
|
PTHR23131+39-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
333-335
|
1.000
|
1-332
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
37988.440
|
7.236
|
4.000
|
27.761
|
11.343
|
48.657
|
51.343
|
15.224
|
12.537
|
44.776
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
darkturquoise
|
631.987
|
385.027
|
476.760
|
489.388
|
633.077
|
640.670
|
582.324
|
1094.916
|
623.890
|
683.717
|
658.077
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.209
|
0.146
|
0.340
|
— | — |
0.671
|
-0.770
|
— | — | — | — | — |
No JSON data available for plots.