Hg_chrom3_TN10mRNA_5268
Organism: Heterodera glycines Gene Locus: chr3:5446754-5447135 Feature type: polypeptideProtein Sequence
Length: 98
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.593 | 1.187 | 0.557 | 1.407 | 0.51 | 1.308 | 0.364 | 1.02 | 0.907 | 0.689 | 0.464 | 3.001 | 1.417 | 1.962 | 2.915 | 0.583 | 0.836 | 0.928 | 1.57 | 1.501 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4993
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — |
14-36
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.040
|
0.848
|
0.122
|
0.051
|
0.039
|
0.005
|
0.011
|
0.125
|
0.051
|
0.143
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007562
|
1.000
|
1.000
|
Hsc_gene_19042.t1
|
Hsc_gene_15739.t1;Hsc_gene_19037.t1;Hsc_gene_19040.t1;Hsc_gene_19042.t1
|
— |
Q04907.2 Large ribosomal subunit protein bL32m [Caenorhabditis elegans]
|
EPB74885.1 ribosomal protein L32 [Ancylostoma ceylanicum]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0006412|GO:0015934
|
— |
IPR002677+10-58+|IPR011332+7-59+
|
— |
PF01783+10-58+Ribosomal_L32p_protein_family
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
75-98
|
1.000
|
1-74
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.662
|
11764.720
|
10.820
|
12.000
|
25.510
|
14.286
|
44.898
|
55.102
|
19.388
|
6.122
|
45.918
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightgreen
|
339.994
|
251.732
|
329.686
|
515.572
|
565.230
|
397.920
|
449.408
|
271.921
|
97.409
|
371.366
|
253.956
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.897
|
0.755
|
— |
-0.491
|
— |
-0.654
|
0.867
|
— | — | — | — | — |
No JSON data available for plots.