Hg_chrom3_TN10mRNA_5270
Organism: Heterodera glycines Gene Locus: chr3:5450959-5452112 Feature type: polypeptideProtein Sequence
Length: 210
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.775 | 0.952 | 0.657 | 0.476 | 1.465 | 0.397 | 1.667 | 1.481 | 1.673 | 0.794 | 1.401 | 1.19 | 0.916 | 1.166 | 0.68 | 1.015 | 1.154 | 1.832 | 1.401 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4995
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRHGHRVRPRKRQS
|
37-63
|
0.954
|
— | — | — | — |
0.000
|
— | — |
0.222
|
0.136
|
0.037
|
0.229
|
0.599
|
0.397
|
0.405
|
0.011
|
0.213
|
0.139
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007564
|
1.000
|
1.000
|
Hsc_gene_19035.t1
|
Hsc_gene_19035.t1
|
— |
Q96HR9.2 Receptor expression-enhancing protein 6 [Homo sapiens]
|
KAI3420952.1 Receptor expression-enhancing protein 5 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.864|GO:0005575_0.720|GO:0110165_0.720|GO:0016020_0.658|GO:0009987_0.639|GO:0005886_0.634|GO:0071944_0.634|GO:0005622_0.574|GO:0005737_0.552|GO:0043226_0.547|GO:0043229_0.538|GO:0043227_0.530|GO:0043231_0.520|GO:0005773_0.504
|
IPR004345+109-194_113-191+
|
— |
PF03134+113-191+TB2/DP1,_HVA22_family
|
— |
PTHR12300+109-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-210
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
24329.420
|
9.270
|
9.500
|
22.381
|
14.762
|
42.381
|
57.619
|
14.286
|
8.095
|
44.286
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
659.692
|
3.670
|
6.706
|
81.326
|
365.186
|
1480.165
|
140.298
|
1324.321
|
38.128
|
1581.931
|
920.301
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
4.333
|
3.711
|
2.137
|
2.033
|
-3.388
|
— |
-3.091
|
-5.511
|
— | — | — | — |
No JSON data available for plots.