Hg_chrom3_TN10mRNA_5271
Organism: Heterodera glycines Gene Locus: chr3:5453806-5457095 Feature type: polypeptideProtein Sequence
Length: 271
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.815 | 1.459 | 0.805 | 0.509 | 1.907 | 1.892 | 0.439 | 1.292 | 0.82 | 1.247 | 0.615 | 1.954 | 0.615 | 0.639 | 1.807 | 1.423 | 0.786 | 0.671 | 0.0 | 0.543 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4996
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.903
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.511
|
0.155
|
0.002
|
0.681
|
0.051
|
0.195
|
0.248
|
0.020
|
0.122
|
0.042
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007565
|
1.000
|
1.000
|
Hsc_gene_19034.t1
|
Hsc_gene_19034.t1
|
— |
O45717.1 Protein nud-2 [Caenorhabditis elegans]
|
KAI1725837.1 nuclear distribution protein nudE-like 1-A [Ditylenchus destructor]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008017
|
GO:0008150_0.862|GO:0005575_0.856|GO:0110165_0.856|GO:0005622_0.820|GO:0043226_0.765|GO:0043229_0.748|GO:0009987_0.729|GO:0003674_0.656|GO:0005488_0.656|GO:0065007_0.643|GO:0050789_0.640|GO:0005737_0.584|GO:0043228_0.570|GO:0043232_0.570|GO:0005515_0.543|GO:0032502_0.541|GO:0016020_0.540|GO:0032501_0.534|GO:0048856_0.533|GO:0050794_0.528
|
IPR033494+9-142+
|
— | — | — |
PTHR10921+9-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-271
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.525
|
30925.380
|
5.467
|
-4.500
|
31.365
|
6.642
|
59.779
|
40.221
|
15.498
|
15.867
|
45.387
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
darkorange
|
633.312
|
558.606
|
639.320
|
557.325
|
786.075
|
906.708
|
1064.551
|
817.064
|
525.460
|
378.027
|
441.212
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.141
|
— |
0.465
|
0.221
|
0.241
|
-0.257
|
0.525
|
— | — | — | — | — |
No JSON data available for plots.