Hg_chrom3_TN10mRNA_5273
Organism: Heterodera glycines Gene Locus: chr3:5460251-5462728 Feature type: polypeptideProtein Sequence
Length: 565
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.926 | 1.153 | 0.708 | 0.244 | 1.032 | 0.908 | 0.653 | 1.15 | 1.416 | 1.531 | 1.126 | 2.29 | 2.507 | 0.885 | 0.65 | 0.885 | 0.58 | 0.885 | 0.953 | 0.677 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4998
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — |
0.948
|
0.009
|
1.000
|
— |
0.078
|
0.098
|
0.039
|
0.199
|
0.888
|
0.285
|
0.366
|
0.046
|
0.291
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001921
|
3.000
|
1.000
|
Hsc_gene_19032.t1
|
Hsc_gene_19032.t1
|
— |
Q21706.2 Putative UDP-glucuronosyltransferase ugt-47 [Caenorhabditis elegans]
|
KAI1702594.1 UDP-glucoronosyl and UDP-glucosyl transferase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.833|GO:0003674_0.722|GO:0009987_0.643|GO:0003824_0.630|GO:0005575_0.594|GO:0110165_0.594|GO:0016740_0.564|GO:0016020_0.552|GO:0050896_0.544|GO:0016757_0.535|GO:0008194_0.525|GO:0008152_0.522|GO:0016758_0.511|GO:0005622_0.508|GO:0005737_0.508
|
IPR002213+40-479_50-553+|IPR035595+384-427+|IPR050271+15-534+
|
— |
PF00201+50-553+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
G3DSA:3.40.50.2000:FF:000021+305-481+UDP-glucuronosyltransferase
|
PTHR48043+15-534+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-565
|
6lg0_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.697
|
64182.970
|
8.421
|
9.500
|
23.009
|
14.867
|
41.239
|
58.761
|
12.920
|
10.088
|
43.186
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
violet
|
735.362
|
54.016
|
1142.367
|
478.009
|
482.603
|
1755.684
|
1324.186
|
1519.537
|
417.757
|
370.238
|
390.603
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.175
|
3.008
|
-1.150
|
— |
1.879
|
-0.398
|
— | — | — | — | — | — | — |