Hg_chrom3_TN10mRNA_5274
Organism: Heterodera glycines Gene Locus: chr3:5463809-5471363 Feature type: polypeptideProtein Sequence
Length: 778
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.031 | 1.016 | 0.748 | 0.621 | 0.985 | 1.977 | 0.704 | 2.185 | 0.943 | 1.268 | 0.409 | 1.21 | 0.857 | 1.013 | 1.18 | 1.653 | 0.906 | 0.915 | 0.297 | 0.265 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_4999
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.757
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — |
60-85
|
0.834
|
— | — |
0.000
|
— | — |
0.868
|
0.187
|
0.014
|
0.398
|
0.046
|
0.062
|
0.029
|
0.010
|
0.088
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007567
|
1.000
|
1.000
|
Hsc_gene_19031.t1
|
Hsc_gene_19031.t1
|
— |
Q9XTJ4.1 Nuclear hormone receptor family member nhr-3 [Caenorhabditis elegans]
|
KAI1716985.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0000978|GO:0003700|GO:0006355|GO:0008270|GO:0043565
|
GO:0008150_0.897|GO:0003674_0.842|GO:0005488_0.842|GO:0009987_0.837|GO:0065007_0.826|GO:0050789_0.824|GO:0050794_0.822|GO:0005575_0.819|GO:0110165_0.809|GO:0008152_0.780|GO:0019222_0.780|GO:0031323_0.779|GO:0044237_0.779|GO:0043170_0.776|GO:0060255_0.776|GO:0005622_0.771|GO:0009058_0.770|GO:0009059_0.770|GO:0010467_0.770|GO:0044238_0.770|GO:0044249_0.770|GO:0080090_0.770|GO:0009889_0.768|GO:0010556_0.768|GO:0031326_0.768|GO:0006139_0.763|GO:0006351_0.763|GO:0016070_0.763|GO:0032774_0.763|GO:0034654_0.763|GO:0090304_0.763|GO:0141187_0.763|GO:0097159_0.761|GO:0019219_0.757|GO:0051252_0.757|GO:0010468_0.755|GO:2001141_0.749|GO:0006355_0.746|GO:0003676_0.729|GO:0043226_0.718|GO:0003677_0.710|GO:0043565_0.710|GO:0043229_0.702|GO:0003690_0.648|GO:1990837_0.642|GO:0006366_0.630|GO:0016020_0.627|GO:0048518_0.612|GO:0006357_0.610|GO:0048522_0.587|GO:0000976_0.571|GO:0001067_0.571|GO:0005634_0.571|GO:0043227_0.571|GO:0043231_0.571|GO:0009893_0.557|GO:0032501_0.555|GO:0010604_0.551|GO:0050896_0.549|GO:0031325_0.546|GO:0009891_0.540|GO:0031328_0.540|GO:0010557_0.535|GO:0140110_0.527|GO:0045935_0.520|GO:0051254_0.520|GO:0045893_0.514|GO:1902680_0.514
|
IPR000536+492-737_525-713_528-708+|IPR001628+235-306_235-310_237-304_238-254_238-264_254-269_287-295_295-303+|IPR001723+299-309_529-550_550-566_634-649_696-713+|IPR013088+230-334+|IPR035500+494-716_494-723+|IPR049636+238-313+|IPR052496+231-332+
|
SM00399+235-306+|SM00430+528-708+
|
PF00104+525-713+Ligand-binding_domain_of_nuclear_hormone_receptor|PF00105+237-304+Zinc_finger,_C4_type_(two_domains)
|
G3DSA:3.30.50.10:FF:000030+231-333+Nuclear_Hormone_Receptor_family
|
PTHR47519+231-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-239;306-436;750-778
|
2.000
|
240-305;437-749
|
4iqr_F
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.756
|
84715.860
|
6.749
|
5.000
|
22.879
|
8.740
|
52.057
|
47.943
|
12.853
|
10.026
|
53.470
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2608.198
|
5274.353
|
7275.927
|
2162.479
|
1882.251
|
2863.226
|
1611.822
|
4135.845
|
1807.536
|
603.001
|
1119.230
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.236
|
-1.423
|
-1.643
|
-0.231
|
0.619
|
-0.821
|
— |
-1.224
|
— | — | — | — | — |
No JSON data available for plots.