Hg_chrom3_TN10mRNA_5279
Organism: Heterodera glycines Gene Locus: chr3:5503718-5505441 Feature type: polypeptideProtein Sequence
Length: 260
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 0.716 | 1.049 | 0.531 | 0.962 | 0.986 | 1.145 | 0.0 | 1.111 | 1.403 | 0.991 | 1.584 | 1.389 | 0.666 | 1.57 | 1.044 | 0.757 | 1.049 | 0.592 | 0.905 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5004
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.962
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm|mitochondrion
|
— |
RRYSKVIWRSLKRQRP
|
29-50
|
0.995
|
13-50
|
0.993
|
— | — |
0.000
|
— | — |
0.307
|
0.643
|
0.059
|
0.542
|
0.050
|
0.129
|
0.085
|
0.418
|
0.113
|
0.205
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007570
|
1.000
|
1.000
|
Hsc_gene_19024.t1
|
Hsc_gene_19024.t1
|
— |
Q2KHU0.1 Phosphoserine phosphatase [Bos taurus]
|
KAI1717581.1 haloacid dehalogenase-like hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.882|GO:0005575_0.578|GO:0110165_0.561|GO:0003674_0.546|GO:0005622_0.502
|
IPR023214+35-259+|IPR036412+43-258+|IPR050582+33-255+
|
— |
PF00702+46-220+haloacid_dehalogenase-like_hydrolase
|
— |
PTHR43344+33-255+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-260
|
1nnl_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
28858.230
|
9.488
|
7.000
|
25.769
|
8.846
|
44.615
|
55.385
|
14.231
|
11.538
|
49.231
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
86.182
|
20.235
|
124.625
|
56.824
|
49.556
|
80.248
|
160.530
|
320.006
|
8.154
|
66.422
|
41.450
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.393
|
1.353
|
-1.023
|
— |
0.712
|
1.012
|
1.894
|
-0.852
|
— | — | — | — | — |
No JSON data available for plots.