Hg_chrom3_TN10mRNA_5280
Organism: Heterodera glycines Gene Locus: chr3:5505447-5507851 Feature type: polypeptideProtein Sequence
Length: 439
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.059 | 0.689 | 0.621 | 0.864 | 1.139 | 1.227 | 1.112 | 1.367 | 1.215 | 1.416 | 0.932 | 1.742 | 1.582 | 0.745 | 0.79 | 0.976 | 0.71 | 0.828 | 1.402 | 0.402 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5005
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.591
|
0.244
|
0.018
|
0.662
|
0.113
|
0.164
|
0.155
|
0.040
|
0.149
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003555
|
1.000
|
2.000
|
Hsc_gene_19023.t1;Hsc_gene_19023.t2
|
Hsc_gene_19023.t1;Hsc_gene_19023.t2
|
— |
A2AJL3.1 FGGY carbohydrate kinase domain-containing protein [Mus musculus]
|
WP_056498923.1 FGGY-family carbohydrate kinase [Aureimonas sp. Leaf454];KQT54109.1 ribulokinase [Aureimonas sp. Leaf454]
|
WP_150968136
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016301
|
GO:0008150_0.936|GO:0009987_0.818|GO:0008152_0.690|GO:0044238_0.663|GO:0044237_0.659|GO:0005975_0.580|GO:0003674_0.558|GO:0006793_0.545|GO:0006796_0.545
|
IPR018484+2-153+|IPR018485+163-377+|IPR043129+1-154_159-425+
|
— |
PF00370+2-153+FGGY_family_of_carbohydrate_kinases,_N-terminal_domain|PF02782+163-377+FGGY_family_of_carbohydrate_kinases,_C-terminal_domain
|
— |
PTHR43435+1-432+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-439
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.707
|
48208.640
|
7.228
|
5.000
|
23.007
|
11.617
|
41.913
|
58.087
|
12.756
|
10.251
|
47.836
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
salmon
|
588.708
|
48.557
|
143.652
|
143.842
|
153.360
|
184.495
|
393.554
|
385.796
|
184.995
|
1891.882
|
1160.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.334
|
1.430
|
— | — | — |
1.103
|
0.957
|
— |
-3.506
|
— | — | — | — |
No JSON data available for plots.