Hg_chrom3_TN10mRNA_5287
Organism: Heterodera glycines Gene Locus: chr3:5556625-5557450 Feature type: polypeptideProtein Sequence
Length: 128
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.091 | 1.999 | 0.0 | 0.269 | 0.26 | 0.601 | 2.697 | 0.781 | 0.694 | 0.845 | 0.71 | 0.919 | 2.17 | 0.601 | 1.913 | 2.567 | 0.512 | 0.118 | 0.0 | 1.149 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5012
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
30C02|JF896103.1#TN10pacbiomikado.Chromosome_3G3271.1
|
— | — | — | — |
9-Migratory
|
0.980
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
extracellular
|
mitochondria
|
RKKNSSSSEQKTQRRNRG,RRKNRKKNSSSSEQKTQRR
|
18-58
|
0.953
|
— | — |
1-20
|
0.999
|
1.000
|
0.000
|
0.000
|
0.318
|
0.202
|
0.024
|
0.161
|
0.119
|
0.113
|
0.124
|
0.006
|
0.455
|
0.937
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0007574
|
1.000
|
1.000
|
Hsc_gene_17812.t1
|
— | — | — |
AEN69461.1 putative 30C02 parasitic stage effector [Heterodera glycines]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
62-128
|
1.000
|
1-61
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.979
|
13464.840
|
12.087
|
17.000
|
17.188
|
13.281
|
49.219
|
50.781
|
15.625
|
1.562
|
57.812
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
7344.036
|
17.755
|
2681.839
|
2807.404
|
463.285
|
45.078
|
19.269
|
2158.688
|
34636.766
|
3080.089
|
16604.379
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7.011
|
7.165
|
— |
-2.632
|
-3.346
|
-1.216
|
5.481
|
-6.667
|
3.402
|
-3.482
|
-2.507
|
— | — |