Hg_chrom3_TN10mRNA_5288
Organism: Heterodera glycines Gene Locus: chr3:5559838-5561053 Feature type: polypeptideProtein Sequence
Length: 110
(Signal peptide: 1-35)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.057 | 0.634 | 0.496 | 4.075 | 0.455 | 0.699 | 0.541 | 0.455 | 1.616 | 1.966 | 0.551 | 0.535 | 2.273 | 0.699 | 0.371 | 1.688 | 0.298 | 0.826 | 0.699 | 0.802 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5013
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — |
1-35
|
0.983
|
1.000
|
1.000
|
1.000
|
0.129
|
0.019
|
0.020
|
0.201
|
0.200
|
0.680
|
0.184
|
0.005
|
0.757
|
0.185
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003557
|
2.000
|
1.000
|
Hsc_gene_5582.t2
|
— | — |
Q9XWU2.1 Protein SUP-1 [Caenorhabditis elegans]
|
KAI1703843.1 protein SUP-1 [Ditylenchus destructor]
|
No
|
0.240
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.929|GO:0110165_0.925|GO:0071944_0.846|GO:0005886_0.833|GO:0016020_0.833|GO:0030054_0.577|GO:0045202_0.568|GO:0098590_0.566|GO:0042995_0.555|GO:0120025_0.554|GO:0043005_0.550|GO:0044297_0.547|GO:0036477_0.546|GO:0032809_0.540|GO:0043025_0.540|GO:0044298_0.540
|
IPR022559+45-107_53-89+
|
— |
PF10853+53-89+Protein_of_unknown_function_(DUF2650)
|
— |
PTHR34149+45-107+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-110
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.712
|
11941.230
|
6.744
|
0.500
|
11.818
|
12.727
|
30.909
|
69.091
|
6.364
|
5.455
|
53.636
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
364.742
|
71.733
|
234.755
|
344.512
|
674.347
|
890.861
|
267.805
|
559.688
|
91.048
|
386.072
|
259.633
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.482
|
2.127
|
0.662
|
0.936
|
0.417
|
-1.729
|
-0.771
|
-0.928
|
— | — | — | — | — |