Hg_chrom3_TN10mRNA_5291
Organism: Heterodera glycines Gene Locus: chr3:5575985-5577782 Feature type: polypeptideProtein Sequence
Length: 194
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.079 | 1.439 | 0.937 | 0.889 | 0.687 | 0.264 | 0.982 | 1.804 | 1.145 | 1.254 | 0.703 | 1.213 | 1.861 | 0.991 | 1.052 | 0.736 | 0.845 | 1.484 | 0.397 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom3_TN10gene_5016
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
33-66
|
0.975
|
— | — |
0.000
|
— | — |
0.403
|
0.378
|
0.140
|
0.617
|
0.090
|
0.067
|
0.052
|
0.195
|
0.114
|
0.320
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q9XWN7.1 Nucleoside hydrolase [Caenorhabditis elegans]
|
KAI1725979.1 inosine-uridine preferring nucleoside hydrolase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016799
|
GO:0005575_0.714|GO:0008150_0.697|GO:0110165_0.648|GO:0003674_0.635|GO:0008152_0.573|GO:0005622_0.559|GO:0003824_0.540|GO:0044238_0.537|GO:0005737_0.507
|
IPR001910+5-167+|IPR036452+1-168_1-183+|IPR052775+2-167+
|
— |
PF01156+5-167+Inosine-uridine_preferring_nucleoside_hydrolase
|
— |
PTHR46190+2-167+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-194
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.799
|
21066.320
|
7.737
|
4.500
|
22.680
|
11.856
|
40.206
|
59.794
|
13.402
|
9.278
|
56.701
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkorange
|
142.996
|
35.266
|
281.062
|
85.092
|
64.570
|
81.879
|
113.392
|
142.971
|
283.514
|
111.383
|
185.153
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.766
|
1.134
|
-1.615
|
-0.430
|
— | — |
0.700
|
— | — | — | — | — | — |
No JSON data available for plots.